| Sequence 1: | NP_002283.3 | Gene: | LAMB2 / 3913 | HGNCID: | 6487 | Length: | 1798 | Species: | Homo sapiens |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_013521.3 | Gene: | VPS36 / 851135 | SGDID: | S000004409 | Length: | 566 | Species: | Saccharomyces cerevisiae |
| Alignment Length: | 338 | Identity: | 68/338 - (20%) |
|---|---|---|---|
| Similarity: | 107/338 - (31%) | Gaps: | 128/338 - (37%) |
- Green bases have known domain annotations that are detailed below.
|
Human 1150 IDTPQCHRFTGHCSCRPGV--------SGVRC-----------DQCARGFSGIFPAC----HP-- 1189
Human 1190 --CHACFGDWDRVVQDLAARTQRLEQRAQELQQTGVLGAFESSFWHMQ-EKLGIVQGIVGARN-- 1249
Human 1250 -----TSAASTAQLVEATE-ELRREIG----EATEHLTQLEADLTDVQDENFNAN---------- 1294
Human 1295 -----H----------------ALSGLERDR--------LALNLTLRQLDQHLDLLKHSNFLGAY 1330
Human 1331 DSIRHAHSQSAEAERRANTSALAVPSPVSNSASARHRTEALMDAQKEDFNSKHMANQRALGKLSA 1395
Human 1396 HTHTLSLTDINEL 1408 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| LAMB2 | NP_002283.3 | Laminin_N | 57..281 | CDD:278484 | |
| EGF_Lam | 283..335 | CDD:238012 | |||
| EGF_Lam | 347..399 | CDD:238012 | |||
| Laminin_EGF | 410..467 | CDD:278482 | |||
| EGF_Lam | 469..520 | CDD:238012 | |||
| EGF_Lam | 521..562 | CDD:238012 | |||
| Laminin_EGF | 783..831 | CDD:278482 | |||
| Laminin_EGF | 831..879 | CDD:278482 | |||
| EGF_Lam | 876..921 | CDD:238012 | |||
| EGF_Lam | 926..984 | CDD:238012 | |||
| Laminin_EGF | 986..>1028 | CDD:278482 | |||
| EGF_Lam | 1037..1093 | CDD:238012 | |||
| Laminin_EGF | 1095..1143 | CDD:278482 | |||
| Laminin_EGF | 1143..>1182 | CDD:278482 | 9/50 (18%) | ||
| Domain II | 1190..1409 | 53/271 (20%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1338..1364 | 5/25 (20%) | |||
| Domain alpha | 1410..1442 | ||||
| Domain I | 1443..1798 | ||||
| MA | 1445..1701 | CDD:214599 | |||
| ATP-synt_B | <1453..1541 | CDD:304375 | |||
| HrpJ | 1483..1670 | CDD:301626 | |||
| V-ATPase_G_2 | 1648..1755 | CDD:293604 | |||
| ATP-synt_B | <1680..1792 | CDD:304375 | |||
| VPS36 | NP_013521.3 | PH-GRAM-like_Vps36 | 4..122 | CDD:275409 | |
| Vps36-NZF-N | 109..164 | CDD:407195 | 8/33 (24%) | ||
| RanBP2-type Zn finger | 118..146 | CDD:275376 | 3/13 (23%) | ||
| ZnF_RBZ | 179..203 | CDD:197784 | 8/37 (22%) | ||
| RanBP2-type Zn finger | 181..200 | CDD:275376 | 7/18 (39%) | ||
| EAP30 | 323..549 | CDD:398021 | 23/122 (19%) | ||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.910 | |||||