DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNMaR and TrissinR

DIOPT Version :10

Sequence 1:NP_001027122.2 Gene:CNMaR / 39127 FlyBaseID:FBgn0053696 Length:480 Species:Drosophila melanogaster
Sequence 2:NP_001097092.1 Gene:TrissinR / 33812 FlyBaseID:FBgn0085410 Length:669 Species:Drosophila melanogaster


Alignment Length:581 Identity:129/581 - (22%)
Similarity:229/581 - (39%) Gaps:145/581 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSSGNITAT-------TEADFSSSLGES--NVTEYNTTEMDANESAG--EDEE------------ 49
            ::|.|:|:|       :..|:....|||  ::....||.:..:.|..  ||||            
  Fly   116 TASANVTSTISPPINGSSTDYILLYGESTTSLVPALTTGLSGDGSGAVIEDEEDAEKASEYIFDR 180

  Fly    50 -MLRIAFFIGHFVHQYYIPVLCCTGSIGNILSVFVFFRTKLRKLSSSFYLAALAVSDTCFLAGLF 113
             .:||.|.      ..|..|.||. ..||:|.:.|...::..:..::|:||.||.:|.|  .|||
  Fly   181 TDVRIIFI------TLYTLVFCCC-FFGNLLVILVVTLSRRLRSITNFFLANLAFADFC--VGLF 236

  Fly   114 AQWLNFLNVDIY------NQNYFCQFFTFFSYLASFCSVWFVVAFTVERFIAVIYPLKRQTMCTV 172
            ..   ..|:.||      ...:.|:.:.|...|:...|::.:|...:||:.|:::|:..:.:.|.
  Fly   237 CV---MQNLSIYLIESWVFGEFLCRMYQFVHSLSYTASIFILVVICMERYFAIVHPITCKQILTA 298

  Fly   173 RRAKIVLFCLTLVGCLHCLPYIVIAKPVFMPKLNT------TICDLNSEY--KEQLALFNYWDTI 229
            .|.::|:..:.:...::..|..|.:|.:  ..::|      .||.|:.|.  .:.|.:.|:   :
  Fly   299 ARLRMVIVTVWITSAVYSTPKFVFSKTI--KNIHTQDGQEEEICVLDREMFNSKLLDMINF---V 358

  Fly   230 VVYAVPFTTIAVLNTCTGCTVWKFATVRRTLTMH-----KMKPQT-----------NSM----PS 274
            ::|.:|...:.||.:.....:|:.:   |.||.|     ..:||.           |||    |.
  Fly   359 LLYVMPLLVMTVLYSKIAIALWRSS---RGLTPHVVQHQHQQPQQPSCQDIGMGMHNSMYHHHPH 420

  Fly   275 N-----------SSNSS-------------GGASSAVASYRLS-ASLKRQKSTGTHPSGQHNVAN 314
            :           |:.||             ||...::||...| .||.|::|:.....|. ::..
  Fly   421 HHHHHHQHHQLQSAASSAGVVGVGLGGGGGGGPGPSLASGGSSTTSLSRKQSSKYEKRGV-SITE 484

  Fly   315 RQTDDQEQQQQSQQHQINNCQ----------HHCEITQKPARRKV----------------QNSS 353
            .|.|:.:...::.:..::.|:          ||    |:.....|                .:|:
  Fly   485 SQLDNCKVSLEADRPIVSACRKTSFYHHGHAHH----QRAGNASVGGGSGGAGAGATHMSHSSSN 545

  Fly   354 QLK----VTKMLLIVSTVFVCLNLPSCLLRIEAYWETESARNQNSTIALQYIFHAFFIT--NFGI 412
            .|:    |.:||:|....|...|||....::..||......:.|....|..:  .|.:|  |.|:
  Fly   546 VLRARRGVVRMLIIFVLTFALCNLPYHARKMWQYWSRSYRGDSNFNALLTPL--TFLVTYFNSGV 608

  Fly   413 NFVLYCVSGQNFRKAVLSIFRRVSSAQREAGNTQVTVSEYCRNTGTSTRRRMM-TQHCWNE 472
            |.:||....:||||.:..:.  :.|.::..|.:....|.:.:.....|..... |.|..||
  Fly   609 NPLLYAFLSRNFRKGMKELL--LCSWKKGKGKSSSNSSMHHKRKALQTHSLPTDTTHIGNE 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNMaRNP_001027122.2 7tmA_FMRFamide_R-like 60..428 CDD:410630 103/458 (22%)
TM helix 1 61..87 CDD:410630 8/25 (32%)
TM helix 2 94..119 CDD:410630 10/24 (42%)
TM helix 3 131..161 CDD:410630 8/29 (28%)
TM helix 4 173..193 CDD:410630 2/19 (11%)
TM helix 5 220..245 CDD:410630 6/24 (25%)
TM helix 6 352..382 CDD:410630 10/33 (30%)
TM helix 7 396..421 CDD:410630 8/26 (31%)
TrissinRNP_001097092.1 7tmA_Trissin_R 186..624 CDD:320140 104/464 (22%)
TM helix 1 186..212 CDD:320140 9/32 (28%)
TM helix 2 219..244 CDD:320140 11/29 (38%)
TM helix 3 257..287 CDD:320140 8/29 (28%)
TM helix 4 300..321 CDD:320140 3/20 (15%)
TM helix 5 349..378 CDD:320140 6/31 (19%)
TM helix 6 548..578 CDD:320140 8/29 (28%)
TM helix 7 592..617 CDD:320140 8/26 (31%)

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