DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNMaR and trhr

DIOPT Version :9

Sequence 1:NP_001027122.2 Gene:CNMaR / 39127 FlyBaseID:FBgn0053696 Length:480 Species:Drosophila melanogaster
Sequence 2:XP_002938958.3 Gene:trhr / 100492507 XenbaseID:XB-GENE-992328 Length:397 Species:Xenopus tropicalis


Alignment Length:447 Identity:108/447 - (24%)
Similarity:181/447 - (40%) Gaps:137/447 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 LGESNVTEYNTTEMDANESAGEDEEMLRIAFFIGHFVHQYYIPVLCCTGSIGNILSVFVFFRTKL 89
            :..:..:|.|.|.:...|..|.:.:::.:          :.:.::|..|.:|||:.|.|..:||.
 Frog     1 MDNTTFSELNGTVLQKREWHGLEYQVVTV----------FLVVLICGLGIVGNIMVVLVVLQTKH 55

  Fly    90 RKLSSSFYLAALAVSDTCFL--AGL-------FAQWLNFLNVDIYNQNYF-CQFFTFFSYL---A 141
            .:..::.||.:||::|...|  |||       :..|       :|  .|. |...|:..||   |
 Frog    56 MRTPTNCYLVSLAIADLIVLVAAGLPNITESVYGSW-------VY--GYIGCLCITYLQYLGINA 111

  Fly   142 SFCSVWFVVAFTVERFIAVIYPLKRQTMCTVRRAKIVLFCLTLVGCLHCLPYIVIAKPVFMPKLN 206
            |.||   :.||||||::|:.:|:|.|.:||:.|||.::..:.....|:||.:.      |:..||
 Frog   112 SSCS---ITAFTVERYLAICHPIKAQFLCTISRAKKIIVFVWAFTSLYCLMWF------FLLDLN 167

  Fly   207 TTICD----LNSEYKEQLALFN---YWDTIVVYAVPFTTIAVLNTCTGCTVWKFATVRRTLTMHK 264
            |||..    :|..|:...:.::   ..|..:.||||.|...||          :..:.|.|.:  
 Frog   168 TTIYKDATVVNCGYRVPRSFYSPIYLIDFGIFYAVPMTLATVL----------YGLIARILFL-- 220

  Fly   265 MKPQTNSMPSNSSNSSGGASSAVASYRLSASLKRQKSTGTHPSGQHNVANRQTDDQEQQQQSQQH 329
                 |.:||:...:|                |..|:..||.:...|                  
 Frog   221 -----NPIPSDPKENS----------------KTWKNDVTHQNKAFN------------------ 246

  Fly   330 QINNCQHHCEITQKPARRKVQN--SSQLKVTKMLLIVSTVFVCLNLPSCLLRIEAYWETESARNQ 392
                        .|.:.|...|  :|:.:|||||.:|..:|..|.:|...|.:           .
 Frog   247 ------------SKMSSRCSNNTIASRRQVTKMLAVVVILFAFLWMPYRTLVV-----------V 288

  Fly   393 NSTIALQYIFHAFFI--------TNFGINFVLYCVSGQNFRKAVLSIFRRVSSAQRE 441
            ||.::..|: ..:|:        .|..||.|:|.:..|.||.|    ||::...:::
 Frog   289 NSFLSRPYL-QTWFVLFCRICIYLNSAINPVIYNLMSQKFRAA----FRKLCKCKKK 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNMaRNP_001027122.2 7tm_4 73..>262 CDD:304433 64/208 (31%)
trhrXP_002938958.3 7tmA_TRH-R 26..331 CDD:320126 101/411 (25%)
TM helix 1 28..52 CDD:320126 7/33 (21%)
TM helix 2 61..84 CDD:320126 9/22 (41%)
TM helix 3 99..121 CDD:320126 9/24 (38%)
TM helix 4 144..160 CDD:320126 3/15 (20%)
TM helix 5 189..212 CDD:320126 8/32 (25%)
TM helix 6 265..287 CDD:320126 9/21 (43%)
TM helix 7 299..324 CDD:320126 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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