DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cyp40 and CG5808

DIOPT Version :10

Sequence 1:NP_648338.1 Gene:Cyp40 / 39121 FlyBaseID:FBgn0036020 Length:383 Species:Drosophila melanogaster
Sequence 2:NP_651291.1 Gene:CG5808 / 42957 FlyBaseID:FBgn0027617 Length:653 Species:Drosophila melanogaster


Alignment Length:449 Identity:97/449 - (21%)
Similarity:165/449 - (36%) Gaps:125/449 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GRMIIELRKDVVPKTAENFRALCTGECGIGTLGKPLHYKGTKFHKIKRVFVVQSGDVVKNDGSSG 93
            |.:.::|.....|....||..||          :..:|....||.:::.|:.|:|| ....|..|
  Fly    10 GDLTVDLFISERPIACLNFLKLC----------RLKYYNFNLFHTVQQGFIAQTGD-PSGAGDGG 63

  Fly    94 ESIYGPV------FDDENF--ELSHNEEGVVSMANYGKPNSNNSQFFISAAGCEN---LNGTNVV 147
            .||:|.|      |.:..|  :::|:..|::|:.:.|| |...||||::..  ||   |:|.:.|
  Fly    64 SSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAGK-NLVGSQFFLTLG--ENLTSLDGNHCV 125

  Fly   148 VGRVLRGLGIVAEMEQNCTDEG-DP------TAPIVIRD-----------------------CGE 182
            :|.|:.|..::.::.....|:. .|      |..:|:.|                       .|.
  Fly   126 IGEVVEGHEVLRKLNDAIVDDSFRPYQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAERLKNGR 190

  Fly   183 IAHNEDWGIECND-----------------------ETTDKLP----AYPQD--WPRKLDKFTGD 218
            ||.:||  |:..|                       |....||    |.|::  :..||:..|.|
  Fly   191 IAADED--IDDTDGMTAEEMQEMLAEREAKARATILEIVGDLPDADMAPPENVLFVCKLNPVTTD 253

  Fly   219 GAVELL---TGI---------RQSGNH----FYQLGRYHEARAKYRKA------NRYYHYLSRQ- 260
            ..:|::   .|:         |::|:.    |.:........|.|.|.      :|..|....| 
  Fly   254 DDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFKMDNVLIDDRRIHVDFSQS 318

  Fly   261 ---FGWQQLNPLKKHLVDEDLLKVDGFSVVNNINAAAVDLKVGNYTSAREVCNEAIRLDP---KC 319
               ..|:.    |...::.|..|:|    .||:.......|..|..|..|...|..|.:.   :.
  Fly   319 VSKVTWRG----KGRGIEGDYRKLD----FNNLRDDKDHRKPNNGRSRTEDHKERNRTEDFRNRM 375

  Fly   320 SKAFYRRAQAQRGLRNYEEAI--NDLKTAHNLLPENKQILNELNSTKQLLAQYNRQQRN 376
            |.|..|:|:.||.....|..:  |..:...:...:.|.:.....|..:.:.:.:.::||
  Fly   376 SSAERRKAREQRHQEQSERDVRKNLQRRTRSKEKDEKSVYRSKKSQNESVRENSNRERN 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp40NP_648338.1 cyclophilin 15..181 CDD:469651 45/192 (23%)
TPR 231..>370 CDD:440225 31/157 (20%)
TPR repeat 285..315 CDD:276809 7/29 (24%)
TPR repeat 320..346 CDD:276809 8/27 (30%)
CG5808NP_651291.1 cyclophilin_RRM 4..169 CDD:238902 45/172 (26%)
RRM_PPIL4 237..319 CDD:409681 16/81 (20%)
PRK12678 344..>510 CDD:237171 18/91 (20%)
U2AF_lg 467..>572 CDD:273727
Blue background indicates that the domain is not in the aligned region.

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