DRSC/TRiP Functional Genomics Resources

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Protein Alignment LAMB1 and CG7352

DIOPT Version :10

Sequence 1:XP_054214165.1 Gene:LAMB1 / 3912 HGNCID:6486 Length:1810 Species:Homo sapiens
Sequence 2:NP_649795.1 Gene:CG7352 / 40997 FlyBaseID:FBgn0037581 Length:466 Species:Drosophila melanogaster


Alignment Length:459 Identity:96/459 - (20%)
Similarity:178/459 - (38%) Gaps:139/459 - (30%)


- Green bases have known domain annotations that are detailed below.


Human  1455 GGLVTVAHNAWQKAMDL--DQDVLSA---------LAEV---EQLSKMVSEAKLRADEAKQSAED 1505
            ||.:.:....:|....|  :.|..|:         |.||   ::|||:....:...:||..:.|.
  Fly    13 GGTINIGQPLFQVPHSLRKEHDFFSSQLFRKLQYDLEEVSRSQELSKVSPITRDFIEEAAMTQEM 77

Human  1506 ILLK-----TNATKEKMDKSNEELRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQ 1565
            ..||     ....::::.:..||||:|.:|:|            :.|::.::           .:
  Fly    78 QDLKRAEFVERKRRQQLRRDCEELRDLAEQLR------------LAAISRDI-----------AE 119

Human  1566 NLTEDIRERVESLSQVEVILQHSAADIARAEMLLEEAKRASKSATDVKVTADMVKEALEE----- 1625
            ||.|..|.|     |:::.|:  ||::::...|||..:|..:.|  :|.....::|:|.|     
  Fly   120 NLEEKKRRR-----QLDIKLE--AAEVSQERCLLEVRQREKEVA--LKEEQRRLRESLAEQMEEN 175

Human  1626 -----AEKAQVAAEKAI-----KQADED------------IQGTQNLLTSIESETAASEETLFNA 1668
                 .|.|||..::.:     ||..|:            :|..|::|.||:......|......
  Fly   176 RRRRLQEHAQVMNDRELSLLMQKQIQEEDRAQELEAQRKKLQKRQDMLRSIKENQELREWQRAQY 240

Human  1669 SQRISELERNVEELKRKAAQNSGEAEYIEKVVYTVK-------QSAEDVKKTLDGEL-------- 1718
            :|.:|:|.:...:::|:..|...|.:.|::....:.       ...|:.|:..|..|        
  Fly   241 NQELSDLVQKQSDMERRKLQLEAERQEIQRKKQEISIRLGQQVLEIENKKRHRDNLLLDLLEAEY 305

Human  1719 ----DEKYK---KVENLIAKKTEESADARR--------------KAEML-----------QNEAK 1751
                ||:|:   :.|.:..::|.:..|..|              :|||.           ||..|
  Fly   306 TAKSDERYRQQMQQEQMSRQRTRQELDRYRQEVKHRKMAEMQMKRAEMATRQEEAPDTINQNSEK 370

Human  1752 TL------LAQANSKLQLLKDLERK----YEDNQRYLEDK----AQELARLEGEVRSLLKDISQK 1802
            .|      .|...|.|.:::|..||    ..:|.:|.:.|    |::..|::.|..::|..:...
  Fly   371 QLDEYRRRRAHGASLLAMIEDNHRKRAEATAENVQYFDMKAKIDAEQEERIKQERLAMLSQVPSS 435

Human  1803 VAVY 1806
            |..|
  Fly   436 VLRY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LAMB1XP_054214165.1 Laminin_N 59..293 CDD:459653
EGF_Lam 295..347 CDD:238012
EGF_Lam 359..411 CDD:238012
Laminin_EGF 422..479 CDD:395007
Laminin_EGF 482..536 CDD:395007
EGF_Lam 533..>572 CDD:238012
EGF_Lam 797..842 CDD:214543
Laminin_EGF 845..893 CDD:395007
Laminin_EGF 891..938 CDD:395007
Laminin_EGF 941..997 CDD:395007
Laminin_EGF 1000..1044 CDD:395007
Laminin_EGF 1052..1106 CDD:395007
Laminin_EGF 1108..1156 CDD:395007
Laminin_EGF 1156..>1195 CDD:395007
PTZ00121 <1248..1802 CDD:173412 94/453 (21%)
cc_LAMB1_C 1738..1810 CDD:411971 24/108 (22%)
CG7352NP_649795.1 TPH 94..431 CDD:464007 77/368 (21%)
Blue background indicates that the domain is not in the aligned region.

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