DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LAMB1 and NetB

DIOPT Version :10

Sequence 1:XP_054214165.1 Gene:LAMB1 / 3912 HGNCID:6486 Length:1810 Species:Homo sapiens
Sequence 2:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster


Alignment Length:849 Identity:189/849 - (22%)
Similarity:283/849 - (33%) Gaps:288/849 - (33%)


- Green bases have known domain annotations that are detailed below.


Human    30 LLPVLPA---ALCRARVRAQEPEFSYGCAEGSCYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIV 91
            |||::.|   ....|.:.:.:|.:..| ....|.|:..:...|  ..:..:|.||..:||.||  
  Fly    12 LLPIILALAIGSSAAGISSNDPCYFEG-KPRKCLPSFVNAAYG--NPVQASSVCGAQQPERYC-- 71

Human    92 SHLQEDKKCFICNS--QDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSENGV---------ENV 145
             .|..|.....|.|  |..|......|   :.|      |:.:..|......|         :||
  Fly    72 -ELLRDGNAGECRSCEQQRYGPAALTD---LNN------PSNVTCWRSGAVNVPHDPDSAPPDNV 126

Human   146 TIQLDLEAEFHFTHLIMTF--KTFRPAAMLIERSSDFGKTWGVYRYFAYDCEASFPGISTGPMKK 208
            |:.|.|..::..|::.::|  ::.||.::.|.:|||||:||..:::::..|:..:.......:.|
  Fly   127 TLTLSLGKKYELTYISLSFCPRSPRPDSLAIFKSSDFGQTWQPFQFYSSQCQKFYGRPDRAKISK 191

Human   209 VDDIICDSRYSDIEPSTEG---EVIFRALDPAFKIEDPYSPRI-QNLLKITNLRIKFVKL----- 264
            .::  .::|..:.:..|.|   ...|..|:......|..|..: |:.:..|::|:.|.:|     
  Fly   192 FNE--QEARCINSQHDTGGAAQRFAFNTLEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQ 254

Human   265 --------------------------------------HTLGDN------------------LLD 273
                                                  :.|.||                  |.|
  Fly   255 LLKVKNANAFSDEMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDD 319

Human   274 SRMEI--------------------REKYY----------------------------------- 283
            ..:.:                    .||:|                                   
  Fly   320 DHLHLDYASDGESVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAAS 384

Human   284 ---------YAVYDMVVRGNCFCYGHASECAPV-------------DGFNEEVEG--MVHGH--- 321
                     |||.|..|.|.|.|.||||||...             ||.:|:...  .:..|   
  Fly   385 AVTLPISQHYAVSDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGR 449

Human   322 -----------CMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSISCHFDMAVY 375
                       |.|:|||.|..||.|..||.|.||..|...::|.||.|.||.|:..|.|::.:|
  Fly   450 STQMSAKLTMTCACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELY 514

Human   376 LATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQHPERDIRDPNFCERCTCDPAGSQNEGICDSYTD 440
            ..:|.||||||.:|||:|.||.|..|:..||:...:.......|:||.|.|.||..: .|:.   
  Fly   515 KLSGRVSGGVCYNCQHDTTGRYCHYCREGYYRDATKPPNHRKVCKRCDCHPVGSTGK-TCNH--- 575

Human   441 FSTGLIAGQCRCKLNVEGEHCDVCKEGFYDLSS------EDPFGCKSCACNPLGTIPGGNPCDSE 499
                 ::|||.||..|.|..|:.|..|:....|      :.|...........|...||...|.:
  Fly   576 -----LSGQCPCKEGVTGLTCNRCARGYQQTRSHVAPCIKVPTNANMIQAESAGGGGGGGTGDYK 635

Human   500 TGHCYCKRLVTG--------QHCDQCLPEHWGLSNDLDGCRPCDCDLGGALNNSCFAE------- 549
            .|         |        ::|.:|......|:                ||..|..:       
  Fly   636 DG---------GGSQVEEMKKYCGKCKASPKKLN----------------LNKFCMEDYAILAKV 675

Human   550 ------SGQCSCRPHMIGRQCNEVEPGYYFATLDHYLYEAEEANLGPGVSIVERQYIQDRIPSWT 608
                  |...|.....|.|| ||:           |.|   |.|:   .:|.:|..:.....|..
  Fly   676 IGHDRASQDISTEKFSIERQ-NEI-----------YKY---EINI---QTIFKRNPMSGTTSSLL 722

Human   609 GAG--FVRVPEGAYLEFFIDNIPYSMEYDILIRYEPQLP---------------DHWEKAVITVQ 656
            |.|  .:.||..: :|.....|..:..|.||.|.....|               |.|...:...|
  Fly   723 GRGNMMLLVPRKS-IECQCPKIKLNKSYLILGRDSEAAPGYLAIGPSSVVLEWKDEWSLRMKRFQ 786

Human   657 RPGR 660
            |..|
  Fly   787 RRAR 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LAMB1XP_054214165.1 Laminin_N 59..293 CDD:459653 65/375 (17%)
EGF_Lam 295..347 CDD:238012 26/80 (33%)
EGF_Lam 359..411 CDD:238012 24/51 (47%)
Laminin_EGF 422..479 CDD:395007 18/62 (29%)
Laminin_EGF 482..536 CDD:395007 9/61 (15%)
EGF_Lam 533..>572 CDD:238012 10/51 (20%)
EGF_Lam 797..842 CDD:214543
Laminin_EGF 845..893 CDD:395007
Laminin_EGF 891..938 CDD:395007
Laminin_EGF 941..997 CDD:395007
Laminin_EGF 1000..1044 CDD:395007
Laminin_EGF 1052..1106 CDD:395007
Laminin_EGF 1108..1156 CDD:395007
Laminin_EGF 1156..>1195 CDD:395007
PTZ00121 <1248..1802 CDD:173412
cc_LAMB1_C 1738..1810 CDD:411971
NetBNP_511155.1 LamNT 37..261 CDD:214532 53/240 (22%)
EGF_Lam <458..484 CDD:238012 12/25 (48%)
EGF_Lam 498..555 CDD:238012 24/56 (43%)
EGF_Lam 560..608 CDD:238012 18/56 (32%)
NTR_netrin-1_like 661..791 CDD:239634 33/149 (22%)
Blue background indicates that the domain is not in the aligned region.

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