DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3335 and AT5G05720

DIOPT Version :10

Sequence 1:NP_648337.1 Gene:CG3335 / 39119 FlyBaseID:FBgn0036018 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_196191.2 Gene:AT5G05720 / 830456 AraportID:AT5G05720 Length:451 Species:Arabidopsis thaliana


Alignment Length:482 Identity:120/482 - (24%)
Similarity:196/482 - (40%) Gaps:119/482 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRIIVKQLP-KHITEDKLRQIFGAQGTITDLQLKYTPDGKFRQFCFVGYSTEEEAQSAIRHFDN 64
            ||.||||.|| ||:||::||.:|..:|.|.|::||...|||.|||.::|:.||:|||.||.:.:.
plant     1 MSWIIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVNK 65

  Fly    65 TCIQTSRVRVESC----AALGSEDKPQSWSKYAKDSKKNLDKLKEKEREAAAKAKESEKKK---- 121
            ..|.|.|:.||..    ...|.|:.....:.|||..|    |:|:|...:...|.|..|.|    
plant    66 CFIDTYRISVEVADPPPREEGKENTEHFSNAYAKGDK----KIKKKPEVSPDGADEPNKAKISLL 126

  Fly   122 --KKDKVDKVDQILSRHKDDPEFQEFLEAHDKSRTLWGNDLGINKNRENEEEDDEE---QEESRA 181
              ||.:..||..::.....|.|:.       ||||        .||..:.:.|.|.   ::....
plant   127 DSKKTRKIKVVALVGDDVSDMEYY-------KSRT--------KKNLSDSDSDCETYGCEDAIHV 176

  Fly   182 ARDDSGVDADAGDED------GSGDEADEEEDTDKLAEKPISDLEYMKSL-------MATTSG-E 232
            ...|..::||..|::      |.|.:       |.:..:||...|.:|.:       .:..|| .
plant   177 FPIDGDIEADRVDKEFTIHVFGFGHQ-------DVVFLEPIEAREALKGMGVQALQRCSPVSGAP 234

  Fly   233 ATAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLKFFKPLKPYSVRLPSKVHGFCYV-----GF 292
            ....:|||.||.:.      ...:|..|..|:.:      .....|.:.|.:...|.:     .|
plant   235 RDILEPKALADNNE------NTSDVEENDVRRRL------NLDQQVGIDSDITEVCPLYDCCGRF 287

  Fly   293 KTEKDMAKGMLKNKSFIKGKQVFFSDFTE-----KNKVTKASKSGQPLA-PAAVDAGNA---KWK 348
            :|                    .:|:..:     |..:|:..|.|:.|: ...|..|:|   .:.
plant   288 ET--------------------MYSELQDTDESLKKHLTELVKQGKILSFKGTVVDGHALILSFS 332

  Fly   349 HQQDSLSKEDDISES---GRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLP------------LD 398
            ..:.|.:...|:.:.   .::..:|:|:..|.:::|:||..||.:..|.||            |.
plant   333 KNKPSGTVGKDLDKDTILTKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLPERTKGRYAACSSLT 397

  Fly   399 KL----TRKIKGFGTVTYMMPEHALKA 421
            .|    ||.:.....:.:...::::||
plant   398 SLNASSTRYLPSLQVIEWKKVDNSMKA 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3335NP_648337.1 RRM1_RBM19 2..77 CDD:409980 38/75 (51%)
PABP-1234 <245..>435 CDD:130689 36/210 (17%)
RRM3_RBM19 362..440 CDD:409983 17/79 (22%)
RRM4_RBM19 552..623 CDD:409984
PRK10819 <634..>680 CDD:236768
RRM5_RBM19_like 679..760 CDD:409757
RRM6_RBM19 785..864 CDD:409985
AT5G05720NP_196191.2 RRM1_MRD1 2..78 CDD:409981 38/75 (51%)
RRM_SF 351..>390 CDD:473069 11/38 (29%)
Blue background indicates that the domain is not in the aligned region.

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