DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3335 and AT4G09040

DIOPT Version :10

Sequence 1:NP_648337.1 Gene:CG3335 / 39119 FlyBaseID:FBgn0036018 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_192643.2 Gene:AT4G09040 / 826483 AraportID:AT4G09040 Length:304 Species:Arabidopsis thaliana


Alignment Length:354 Identity:91/354 - (25%)
Similarity:138/354 - (38%) Gaps:94/354 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 GRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPIGWNTLFLGANAVAEILAKQF 496
            |..|.:|..|..:|||..::...:.|||.......:|.::|..|.       ...|.:..|...|
plant     8 GISLQILGHKSNQKNPNPNVAFTNHSLSLSTPSLCRLHRHATFPD-------SIPAKSRNLTSYF 65

  Fly   497 K-TSKERILDTSDGGSSAAVRLALGETQVVIEMKRFLEEEGVRLDAFDEPAKKRSNTVILAKNLP 560
            . |::|.:|::|...|||        .:||       |||             .|.|.::|:|:|
plant    66 STTTQEPVLESSSSSSSA--------PEVV-------EEE-------------ISKTRLIAQNVP 102

  Fly   561 AATEISEITPIFSRFGPIGRIVLP------PSGVTALIEYCDPLEARQAFKKLAYSKFKNAPLYL 619
            ..:...:|..:|.::|.:..|.:.      ..|: ..||...|.||..|.|.|...:::...|.:
plant   103 WTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGL-VFIEMASPEEAATALKSLESCEYEGRRLKV 166

  Fly   620 EWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTTLFLR 684
            ::|      ||            |.|:...|.|.|                   .|.|...||:.
plant   167 DYA------KT------------KKKKTYAPRETP-------------------SPVPTFNLFVA 194

  Fly   685 NLNFKTVQETVEKHFRHL-----GSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKN 744
            ||.|    |...||.:..     |::.:.|:...   ||||  :|.||||:.||....||.||..
plant   195 NLAF----EARAKHLKEFFDADTGNVVSTEVIFH---ENPR--RSSGYGFVSFKTKKQAEAALIE 250

  Fly   745 LQLTHIDGNPVELKRSDRVLKTQDNDGAQ 773
            .|.....|.|:.|.:|.:.:|.|..:|.|
plant   251 FQGKDFLGRPIRLAKSKQFVKLQAKEGLQ 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3335NP_648337.1 RRM1_RBM19 2..77 CDD:409980
PABP-1234 <245..>435 CDD:130689 1/2 (50%)
RRM3_RBM19 362..440 CDD:409983 3/7 (43%)
RRM4_RBM19 552..623 CDD:409984 18/76 (24%)
PRK10819 <634..>680 CDD:236768 7/45 (16%)
RRM5_RBM19_like 679..760 CDD:409757 29/85 (34%)
RRM6_RBM19 785..864 CDD:409985
AT4G09040NP_192643.2 RRM_SF 100..167 CDD:409669 16/67 (24%)
RRM 190..267 CDD:440488 29/85 (34%)
Blue background indicates that the domain is not in the aligned region.

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