DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3335 and SF2

DIOPT Version :10

Sequence 1:NP_648337.1 Gene:CG3335 / 39119 FlyBaseID:FBgn0036018 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_652611.1 Gene:SF2 / 53443 FlyBaseID:FBgn0283477 Length:255 Species:Drosophila melanogaster


Alignment Length:182 Identity:34/182 - (18%)
Similarity:74/182 - (40%) Gaps:29/182 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   681 LFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNL 745
            :::.||......:.::..|...|.:..|::..||.|.         :.|::|:.:..|:.|:|..
  Fly     9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP---------FAFVEFEDARDADDAVKAR 64

  Fly   746 QLTHID-----------GNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYR 799
            .....|           |.|...:..:|..:::|..|.........|::..:::|..:|....::
  Fly    65 DGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGGGRMGGRGPPAKRSQYRVMVTGLPASGSWQ 129

  Fly   800 EVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRAFDALSAS 851
            :::|..:..|::..      |.|.:|   |.|.|:::...:.|.|...|..|
  Fly   130 DLKDHMREAGDVCF------ADTYKD---GSGVVEFLRHEDMKYAIKKLDDS 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3335NP_648337.1 RRM1_RBM19 2..77 CDD:409980
PABP-1234 <245..>435 CDD:130689
RRM3_RBM19 362..440 CDD:409983
RRM4_RBM19 552..623 CDD:409984
PRK10819 <634..>680 CDD:236768
RRM5_RBM19_like 679..760 CDD:409757 16/89 (18%)
RRM6_RBM19 785..864 CDD:409985 14/67 (21%)
SF2NP_652611.1 RRM_SF 3..80 CDD:473069 14/79 (18%)
RRM2_SRSF1_like 115..188 CDD:410013 14/67 (21%)
Blue background indicates that the domain is not in the aligned region.

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