DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3335 and Hrb87F

DIOPT Version :10

Sequence 1:NP_648337.1 Gene:CG3335 / 39119 FlyBaseID:FBgn0036018 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster


Alignment Length:180 Identity:52/180 - (28%)
Similarity:91/180 - (50%) Gaps:21/180 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   659 AKPDEEDSRAEDADD--EPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPRE 721
            |:.::.:...:|.::  |||....||:..|:::|..:.::.||...|:|  |::...:||:..| 
  Fly     2 AEQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNI--VDVVVMKDPKTKR- 63

  Fly   722 FKSLGYGFIQFKKSSVAEHALKNLQLTHIDGNPVELKRS-DRVLKTQDNDGAQRRLASQKKQTGT 785
              |.|:|||.:.:|.:.::| :|.:...|||..||.||: .|......|.||          |..
  Fly    64 --SRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPRQEIDSPNAGA----------TVK 115

  Fly   786 KILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDY 835
            |:.|..:........:|:.||.||::.|:.|.....||:  .|||.|:::
  Fly   116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGK--KRGFAFIEF 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3335NP_648337.1 RRM1_RBM19 2..77 CDD:409980
PABP-1234 <245..>435 CDD:130689
RRM3_RBM19 362..440 CDD:409983
RRM4_RBM19 552..623 CDD:409984
PRK10819 <634..>680 CDD:236768 5/22 (23%)
RRM5_RBM19_like 679..760 CDD:409757 26/80 (33%)
RRM6_RBM19 785..864 CDD:409985 15/51 (29%)
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 27/82 (33%)
RRM_SF 116..188 CDD:473069 15/50 (30%)
Blue background indicates that the domain is not in the aligned region.

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