Protein Alignment CG3335 and Rb97D

DIOPT Version :10

• Sequence 1: NP_648337.1
• Gene: CG3335 / 39119
• FlyBaseID: FBgn0036018
• Length: 918
• Species: Drosophila melanogaster
• Sequence 2: NP_524520.1
• Gene: Rb97D / 43231
• FlyBaseID: FBgn0004903
• Length: 471
• Species: Drosophila melanogaster
• Alignment Length: 284
• Identity: 61/284 - (21%)
• Similarity: 114/284 - (40%)
• Gaps: 77/284 - (27%)

  Fly   655 IVNDAKPDEEDS-------RAEDADDEPEPNTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAK 712
            :|.|....:|.:       |.||...|.|....||:..|...|.:|.::..:...|.:  |::..
  Fly     1 MVKDEPLSDESADVIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKV--VDVVV 63

  Fly   713 RRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTH-IDGNPVELKRSDRVLKTQDNDGAQRRL 776
            .||....|   |.|:|||.:.||.:.:.|.:|  ..| |||..||.||:   |...:.:..:..:
  Fly    64 MRDAATKR---SRGFGFITYTKSLMVDRAQEN--RPHIIDGKTVEAKRA---LPRPERESRETNI 120

  Fly   777 ASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEA 841
            :.:      |:.|..:........:|:.|..||.:.|:::....|||:  .|||.||::
  Fly   121 SVK------KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGK--RRGFAFVEF------ 171

  Fly   842 KRAFDALSASTHLYGRRLVLEWSANDDNQDVEE--LRKRTAAKFDGSQAATAAKRSRKSFFDVE- 903
                                     ||...|::  |:|:.|.|:.....       :||.::::
  Fly   172 -------------------------DDYDAVDKAILKKQHAIKYVHVDV-------KKSIYNLDK 204

  Fly   904 ----------GSVQPNQDDDEEEE 917
                      .:::|:.:..::::
  Fly   205 KEKQQPGGLANAIKPSLNQQQQQQ 228

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3335	NP_648337.1	RRM1_RBM19	2..77	CDD:409980
		PABP-1234	<245..>435	CDD:130689
		RRM3_RBM19	362..440	CDD:409983
		RRM4_RBM19	552..623	CDD:409984
		PRK10819	<634..>680	CDD:236768	8/31 (26%)
		RRM5_RBM19_like	679..760	CDD:409757	26/81 (32%)
		RRM6_RBM19	785..864	CDD:409985	15/78 (19%)
Rb97D	NP_524520.1	RRM2_hnRNPA_like	124..196	CDD:409766	22/111 (20%)
		RRM_SF	33..110	CDD:473069	28/86 (33%)