Protein Alignment CG3335 and msi

DIOPT Version :10

• Sequence 1: NP_648337.1
• Gene: CG3335 / 39119
• FlyBaseID: FBgn0036018
• Length: 918
• Species: Drosophila melanogaster
• Sequence 2: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 262
• Identity: 63/262 - (24%)
• Similarity: 105/262 - (40%)
• Gaps: 58/262 - (22%)

  Fly   638 PKSEPKP-------KEEVKPEEKPIVNDAKPDEEDSRAEDADDEPEPNTT-----------LFLR 684
            ||.||..       ||.|........|:.:.....|....:.....|:.:           ||:.
  Fly   144 PKQEPAQQAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDPAPGKLFVG 208

  Fly   685 NLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQFKKSSVAEHALKNLQLTH 749
            .|:::|..:.::::|...|::..|.|.|  ||...|   |.|:|||.|::....|..|| :.:..
  Fly   209 GLSWQTSSDKLKEYFNMFGTVTDVLIMK--DPVTQR---SRGFGFITFQEPCTVEKVLK-VPIHT 267

  Fly   750 IDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSL 814
            :||..::.|.:     |..|   :.|.|::.|    ||.|..:.......||:..|..||.:...
  Fly   268 LDGKKIDPKHA-----TPKN---RPRQANKTK----KIFVGGVSQDTSAEEVKAYFSQFGPVEET 320

  Fly   815 RIPKKATTGEDAHRGFGFVDYMS------------------KAEAKRA--FDALSASTHLYGRRL 859
            .:.....|  ..|||||||.:.:                  |.|.|:|  .:|::.:..|..:|:
  Fly   321 VMLMDQQT--KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRI 383

  Fly   860 VL 861
            :|
  Fly   384 ML 385

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3335	NP_648337.1	RRM1_RBM19	2..77	CDD:409980
		PABP-1234	<245..>435	CDD:130689
		RRM3_RBM19	362..440	CDD:409983
		RRM4_RBM19	552..623	CDD:409984
		PRK10819	<634..>680	CDD:236768	10/48 (21%)
		RRM5_RBM19_like	679..760	CDD:409757	24/91 (26%)
		RRM6_RBM19	785..864	CDD:409985	24/97 (25%)
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	24/79 (30%)
		RRM2_MSI	292..365	CDD:240769	18/74 (24%)