Protein Alignment CG3335 and Syp

DIOPT Version :10

• Sequence 1: NP_648337.1
• Gene: CG3335 / 39119
• FlyBaseID: FBgn0036018
• Length: 918
• Species: Drosophila melanogaster
• Sequence 2: NP_001262777.1
• Gene: Syp / 42460
• FlyBaseID: FBgn0038826
• Length: 761
• Species: Drosophila melanogaster
• Alignment Length: 524
• Identity: 104/524 - (19%)
• Similarity: 188/524 - (35%)
• Gaps: 170/524 - (32%)

  Fly    70 SRVRVESCAALGSEDKPQSWSKYAKDSKKNLDKLKEK---------------------EREAAAK 113
            ||..:::.::..:.....|.||.|:.:.:.||.:.:|                     :::.|.|
  Fly    21 SRTILKTPSSFRTPSPIPSCSKMAEGNGELLDDINQKADDRGDGERTEDYPKLLEYGLDKKVAGK 85

  Fly   114 AKESEKKKKKDKVDKVDQILSRHKDDP------EFQEFLEAH-----DKSRTLWGNDLGINKNRE 167
            ..|..|..|....:..::.|...|:.|      ...:|||::     :||..|    .|:.|.
  Fly    86 LDEIYKTGKLAHAELDERALDALKEFPVDGALNVLGQFLESNLEHVSNKSAYL----CGVMKT-- 144

  Fly   168 NEEEDDEEQEESRAARDDSGVDADA----GDED-------------------------------- 196
                   .:::|||::  .||.|.|    .|||
  Fly   145 -------YRQKSRASQ--QGVAAPATVKGPDEDKIKKILERTGYTLDVTTGQRKYGGPPPHWEGN 200

  Fly   197 --GSGDEA-------DEEEDT------------D-KLAEKPISDLEYMKSLMATTSGEA------ 233
              |:|.|.       |..||.            | :|...|::......:.:..|:.||
  Fly   201 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVR 265

  Fly   234 --------TAKKPKAKADKSNLELFTIKIHNVPYNTKRQEVLKFFKPLKP--YSVRLPS------ 282
                    |.||.......:|..||   :.|:|.|..|.|:::.|....|  |.|.:.|
  Fly   266 QLNDFEIRTGKKIGVTISFNNHRLF---VGNIPKNRDRDELIEEFSKHAPGLYEVIIYSSPDDKK 327

  Fly   283 KVHGFCYVGFKTEKDMAKGMLKNKSFIKGKQVFFSDFTEKNKVTKASKSGQPLAPAAVDAGNAKW 347
            |..|||::.:::.|  |..:.|.:......:|:..|.                   .||     |
  Fly   328 KNRGFCFLEYESHK--AASLAKRRLGTGRIKVWGCDI-------------------IVD-----W 366

  Fly   348 KHQQDSLSKEDDISESGRIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTY 412
            ...|:. ..|..:|:...::.|||....:|:.|::.|||:|.|..|        :|||.:..:.:
  Fly   367 ADPQEE-PDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV--------KKIKDYAFIHF 422

  Fly   413 MMPEHALKAFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPIG 477
            ...:.|::|...|:|.:.....:.:..:|     |..|..:.:..|..:|::.:::.:.....:|
  Fly   423 EDRDSAVEAMRGLNGKEIGASNIEVSLAK-----PPSDKKKKEEILRARERRMMQMMQARPGIVG 482

  Fly   478 WNTL 481
            :.||
  Fly   483 FETL 486

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3335	NP_648337.1	RRM1_RBM19	2..77	CDD:409980	2/6 (33%)
		PABP-1234	<245..>435	CDD:130689	46/197 (23%)
		RRM3_RBM19	362..440	CDD:409983	18/77 (23%)
		RRM4_RBM19	552..623	CDD:409984
		PRK10819	<634..>680	CDD:236768
		RRM5_RBM19_like	679..760	CDD:409757
		RRM6_RBM19	785..864	CDD:409985
Syp	NP_001262777.1	NURR_Syncrip-like	68..150	CDD:410953	16/94 (17%)
		hnRNP-R-Q	153..>563	CDD:273732	76/379 (20%)