DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3335 and maca

DIOPT Version :10

Sequence 1:NP_648337.1 Gene:CG3335 / 39119 FlyBaseID:FBgn0036018 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_650473.1 Gene:maca / 41892 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster


Alignment Length:234 Identity:55/234 - (23%)
Similarity:91/234 - (38%) Gaps:43/234 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   673 DEPEP------NTTLFLRNLNFKTVQETVEKHFRHLGSIHTVEIAKRRDPENPREFKSLGYGFIQ 731
            |.|.|      .|.|.|..|.....:..:.:.|...|.|...:|.:.|     |...|..|||:.
  Fly    29 DPPPPLPNLRMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHR-----RTGISCCYGFVD 88

  Fly   732 FKKSSVAEHALKNLQLTHIDGNPVELKRSDRVLKTQDNDGAQRRLASQKKQTGTKILVRNIPFQA 796
            :.....|..|:..:     ||.....||    ||.     |..| .|:.:.|.:.:.|.|:|...
  Fly    89 YVSERQAAAAVNGM-----DGYETRGKR----LKV-----AFAR-PSEYESTSSSLYVGNLPTYM 138

  Fly   797 QYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRAFDALSASTHLYGR-RLV 860
            ..::||::|..:|.:..:.:.:.......  ||..|:.:....:|:.|         .||. |.:
  Fly   139 DEKKVRELFATYGNIVDVNLLRHKFNNRS--RGVAFLQFELVRDAEVA---------KYGMDRYM 192

  Fly   861 LEWSAND-DNQDVEELRKRTAAKFDGSQAATAAKRSRKS 898
            :|.::.. ..:.||..:|.:::...|||    .|..|||
  Fly   193 IEGASRPLTVKFVEREKKGSSSTSSGSQ----YKDKRKS 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3335NP_648337.1 RRM1_RBM19 2..77 CDD:409980
PABP-1234 <245..>435 CDD:130689
RRM3_RBM19 362..440 CDD:409983
RRM4_RBM19 552..623 CDD:409984
PRK10819 <634..>680 CDD:236768 3/12 (25%)
RRM5_RBM19_like 679..760 CDD:409757 19/80 (24%)
RRM6_RBM19 785..864 CDD:409985 16/79 (20%)
macaNP_650473.1 sex-lethal <41..>210 CDD:273740 44/199 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.