Protein Alignment CG3335 and Caper

DIOPT Version :9

• Sequence 1: NP_648337.1
• Gene: CG3335 / 39119
• FlyBaseID: FBgn0036018
• Length: 918
• Species: Drosophila melanogaster
• Sequence 2: NP_609095.1
• Gene: Caper / 33989
• FlyBaseID: FBgn0031883
• Length: 594
• Species: Drosophila melanogaster
• Alignment Length: 432
• Identity: 92/432 - (21%)
• Similarity: 161/432 - (37%)
• Gaps: 114/432 - (26%)

  Fly    81 GSEDKPQSWSKY----AKDSKKNLDKLKEKEREAAAKAKESEKKKKKDKVDKVDQILSRHKDDPE 141
            ||..|.||....    ::|.|...|:..|:   ::.:.|:.|:.:.:|..|:     .||:.:
  Fly    59 GSSHKKQSKRSRSRSGSRDGKSRRDRGNER---SSHRDKDKERDRNRDGGDR-----DRHRRE-- 113

  Fly   142 FQEFLEAHDKSRTLWGNDLGINKNRENEEEDDEEQEESRAARDDSGVDADAGDED---------G 197
                               |.:::||.|.|.:.::.....:||:.|.....||.|         |
  Fly   114 -------------------GGDRDRERERERERDRSRRSRSRDERGGGGRYGDRDKDRRSRDRRG 159

  Fly   198 SGDEADEEEDTDK--------LAEKPISDLEYMKSLMATT---------SGEATAKKPKAKADKS 245
            .......:...||        ...|.:|.:...|...:.:         :.....:.|...||::
  Fly   160 GSKSLQVDRSRDKRRRSRSRDQQRKRLSPIRERKRSHSRSRDRNSRRRGTNSPRRRSPPNGADRT 224

  Fly   246 N-LEL----------FTIKIHNVPYNTKRQEVLKFFKPL-KPYSVRL-----PSKVHGFCYVGFK 293
            . .||          |.|::..   ..:.:::.:||..: |...|||     ..:..|..|:.|.
  Fly   225 TPTELSPEERDARTVFCIQLSQ---RVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFD 286

  Fly   294 TEKDMAKGMLKNKSFIKGKQVFFSDF-TEKNKVTKASKSGQPLAPAAVDAGNAKWKHQQDSLSKE 357
            ..:.:|..:..:...:.|..:..... .|||::..|:.:.||.
  Fly   287 DPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPK---------------------- 329

  Fly   358 DDISESG--RIFFRNLAYTTTEEDLRKLFEQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALK 420
               |.:|  |::..:|.:..||:.||.:||.||.:..:.|.:|..|.:.||:|.:||...:.|.|
  Fly   330 ---SHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKK 391

  Fly   421 AFNTLDGTDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKE 462
            |...|:|.:..|||:.:       .|..|.||.|..||...|
  Fly   392 ALEQLNGFELAGRLMKV-------GNVTERLDMNTTSLDTDE 426

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG3335	NP_648337.1	RRM1_RBM19	2..77	CDD:241008
		RRM_SF	250..314	CDD:302621	13/69 (19%)
		RRM3_RBM19	362..440	CDD:241011	27/79 (34%)
		RRM4_RBM19	552..623	CDD:241013
		RRM	<638..845	CDD:223796
		RRM5_RBM19_like	679..760	CDD:240764
		RRM6_RBM19	785..864	CDD:241015
Caper	NP_609095.1	RRM1_RBM39_like	238..310	CDD:240729	13/74 (18%)
		RRM2_RBM23_RBM39	337..409	CDD:240730	25/78 (32%)
		RBM39linker	425..500	CDD:292157	1/2 (50%)
		RRM3_RBM39_like	483..567	CDD:240731

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463943
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840