DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3335 and Secp43

DIOPT Version :9

Sequence 1:NP_648337.1 Gene:CG3335 / 39119 FlyBaseID:FBgn0036018 Length:918 Species:Drosophila melanogaster
Sequence 2:NP_608837.2 Gene:Secp43 / 33652 FlyBaseID:FBgn0031607 Length:336 Species:Drosophila melanogaster


Alignment Length:340 Identity:70/340 - (20%)
Similarity:122/340 - (35%) Gaps:84/340 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   365 RIFFRNLAYTTTEEDLRKLFEQFG--PVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDG 427
            :::..:|....||..:...|.:.|  |.. |.|..:|.|.:..|:..|.::..:|||.|.:.|:|
  Fly     7 QLWMGSLESYMTENFIIAAFRKMGEDPTT-VRLMRNKYTGEPAGYCFVNFISDDHALDAMHKLNG 70

  Fly   428 TDFHGRLLHLLPSKDIEKNPKEDLDENDASLSFKEKKALKLKKNAQKPIGWNTLFLGANA----- 487
            ....|            .||......|.||.|:      ||..|.::...|    :|..:     
  Fly    71 KPIPG------------TNPIVRFRLNSASNSY------KLPGNEREFSVW----VGDLSSDVDD 113

  Fly   488 --VAEILAKQF---KTSKERILDT---SDGGSSAAVRLALGETQVVIEMKRFLEEEGVRLDAFDE 544
              :.::.:.:|   ||:|. |||:   |.|  ...||..:.:     |.|..|.:....:....:
  Fly   114 YQLYKVFSSKFTSIKTAKV-ILDSLGFSKG--YGFVRFGIED-----EQKSALYDMNGYIGLGTK 170

  Fly   545 PAKKRSNTVILAKNLPAATEISEITPIFSRFGPIGR--------IVLPPSGVTALIEYCDP---- 597
            |.|       :...:|...  ||:.      |.:|.        ..:..:|.|...:|.||    
  Fly   171 PIK-------ICNAVPKPK--SELG------GAVGEGNTNYGYGSGMTAAGGTDYSQYYDPTSTY 220

  Fly   598 ---LEARQAFKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPIVNDA 659
               .:|.|.:.:.|.:...:|..|.:.|..|..:.        |::..:..|....:........
  Fly   221 WQGYQAWQGYYEQAGASITDAAAYYQQAMSQSHSN--------PQTLAQHAEAWSAQRSAQYEQQ 277

  Fly   660 KPDEEDSRAEDADDE 674
            :..:..|.|..|:||
  Fly   278 QQQQTASAANGAEDE 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3335NP_648337.1 RRM1_RBM19 2..77 CDD:241008
RRM_SF 250..314 CDD:302621
RRM3_RBM19 362..440 CDD:241011 19/76 (25%)
RRM4_RBM19 552..623 CDD:241013 15/85 (18%)
RRM <638..845 CDD:223796 7/37 (19%)
RRM5_RBM19_like 679..760 CDD:240764
RRM6_RBM19 785..864 CDD:241015
Secp43NP_608837.2 RRM1_SECp43 7..90 CDD:241054 24/95 (25%)
RRM2_SECp43 99..180 CDD:241056 18/99 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463929
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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