DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and tmeff1a

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:XP_698980.6 Gene:tmeff1a / 570409 ZFINID:ZDB-GENE-070912-294 Length:336 Species:Danio rerio


Alignment Length:297 Identity:67/297 - (22%)
Similarity:101/297 - (34%) Gaps:78/297 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   754 DSETGRCICQHNTHGDN-CDQCAKGFYGNALGGTPNDCKRCPCPNDGACLQINEDTVICT---EC 814
            |::|.   |  :|||:: |:    |..||..|  .:.|....|...|.| :.|...:.|.   :|
Zfish    33 DTDTD---C--STHGEHGCE----GLSGNKSG--LHVCNESSCVFGGIC-RDNGSHLECLCQFQC 85

  Fly   815 PKGYFGSRCEQCSDGFFGDPTGLLGEVQTC----KSCDCNGNVDPNAVGNCNRTTGECLKCIHNT 875
            |: .|...|....|.:..:          |    .:|:....:.....|:|...         .:
Zfish    86 PR-MFDPVCGSDGDTYHSE----------CFLRQAACEQQSPITIITEGHCPDA---------ES 130

  Fly   876 AGEHCDQCLSGHFGDPLALPHGRCDRCSCYEAGTEQDEQSITRCDQVTGQCQCKPNVIGRDCGEC 940
            |....|...||       |......|||....|.|        ||:.:....|..|:   |||  
Zfish   131 ASGDTDLESSG-------LEPSTYSRCSSCRFGAE--------CDEDSEGIWCVCNI---DCG-- 175

  Fly   941 QPGYFNIRSGNGCENCLCDPVG-SYNSTCDRYSGQCHCRPGVMGQRCDQCEN--YFYGFSSEG-C 1001
              || |:       |.:|...| ||::.|......|..:..:..:...||..  ...|.::.| .
Zfish   176 --GY-NL-------NPVCGSDGQSYSNPCQVREASCLKQAQINVRHLGQCSGSAVLVGGANVGRA 230

  Fly  1002 KPC-ECDESGSKGFQCDQNGQ---CPCNDNVEGRRCD 1034
            .|| |.:.|......|:....   |.||....|:.|:
Zfish   231 MPCPEINSSSCVHGTCEMKNDLATCRCNLGFSGKHCE 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532
EGF_Lam 298..347 CDD:238012
Laminin_EGF 359..414 CDD:395007
EGF_Lam 414..458 CDD:214543
Laminin_EGF 461..511 CDD:395007
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012 11/37 (30%)
EGF_Lam 793..836 CDD:214543 10/45 (22%)
Laminin_EGF 847..897 CDD:395007 8/49 (16%)
Laminin_EGF 902..953 CDD:395007 14/50 (28%)
EGF_Lam 956..1001 CDD:214543 10/48 (21%)
Laminin_EGF 1004..1046 CDD:395007 9/35 (26%)
SMC_prok_B <1054..1621 CDD:274008
tmeff1aXP_698980.6 None
Blue background indicates that the domain is not in the aligned region.

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