DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB2 and ush2a

DIOPT Version :9

Sequence 1:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:1558 Identity:377/1558 - (24%)
Similarity:547/1558 - (35%) Gaps:542/1558 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SCSTAILGAQRPPINSAGGHELRGTTFMPALECYDPYGRPQKCLPEFINAAYQLQIESTNTCGEQ 89
            |.||.:..|..|.::             |.:|.|        |:|   |||              
Zfish   310 SQSTCLCPASHPRVH-------------PLVERY--------CIP---NAA-------------- 336

  Fly    90 ND-NHFCIQTMNQNHKNCEFCKYNDHNPSFLTDLHDPQSPTWWQSETMFEGIQHPNYVNLTLHLG 153
            || .|..:..:||:....::...||...::::.:..       ..|.:.:||.    :.:.|..|
Zfish   337 NDTTHNKVLRLNQDAHPLDYINDNDIGTTWISSIFP-------SIELLDKGIT----ITIDLENG 390

  Fly   154 KSYDITYVRILFRSPRPESFTIYKRTSESGPWIPYQFYSATCRDTYSLPDSRAIRKGEGEAHALC 218
            : |.:.||.:.|.:.:||:..|.::|..|..|..:||.:..| ..:.:.|:.|:.:.:.   ..|
Zfish   391 Q-YQVFYVILQFLNAQPEAVRIQRKTVGSSEWKDWQFLAKNC-SYFGMEDNGALDRPDS---VNC 450

  Fly   219 TSEYSDISPLRDGEIAFSTLEGRPS---GIN-FERSGELQEWVTATDIRITLDRLNTFGDELFGD 279
            ....||| |...|.|.||.|...|:   |.| |..|..|||:|.||.:||.|     .|.....|
Zfish   451 LQLPSDI-PYSRGNITFSMLTPEPNLRPGYNDFYNSAALQEFVRATHVRIQL-----HGQYHTQD 509

  Fly   280 SQV-LKSYFYAISDIAVGARCKCNGHASKCVPSTGMHGERTLVCEC--RHNTDGPDCDRCLPLYN 341
            :.| .:..:||:.:|.:..||:|:|||..|..|...:.     |.|  ..:|.|.:|:||:||:|
Zfish   510 ATVPFRHRYYAVDEITISGRCECHGHADSCDTSVSPYR-----CACLPESHTHGANCERCIPLFN 569

  Fly   342 DLKWKRSTSTEVNECKACNCNGLADKCFFDANLFNRTGH-----GGHCLDCRENRDGPNCERCKE 401
            |..::.....:...|:.|.|.|.|..|.::::|....|.     ||.|.||..|..|.|||||:.
Zfish   570 DKPFRPGDQIQAFNCRPCQCYGHASSCHYNSSLDPHPGEHFRGGGGVCDDCTHNTTGRNCERCRS 634

  Fly   402 NFYMRDDG-------YCVNCACDPVG--SRSLQCNS-HGKCQCKPGVTGDKCDRCDNNYYQFG-- 454
            .|| |:.|       .|..|.|...|  :.||.|.. .|:|:||..|:|.:|::|.:.:|:..  
Zfish   635 LFY-REVGALLWATDVCKACECHSAGTINASLHCEPIGGQCKCKRHVSGRQCNQCQHGFYKLQSA 698

  Fly   455 -PHGCQQCGCDSGGSHQNTPACDTETGICFCKENVEGRRCNECKPGFFNLDKNNRFGCTPCFCYG 518
             ..||:.|.|::.|:.|....|..::|.|.||.||.|..|:.|..||..|:..|..||..|.|  
Zfish   699 LADGCRACNCNTAGTVQPDITCHQDSGQCQCKANVIGLTCDRCNYGFKFLNHTNPDGCISCGC-- 761

  Fly   519 HTSECMTAPGYSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDR 583
                                    :.|                          |:.|   |..:.
Zfish   762 ------------------------DPW--------------------------GSLH---QFCNP 773

  Fly   584 FLGDQRASYNRDLKFKLQLVGQVANTGVSDVILEGAGSRISLPIFAQGNGIPDQGVKEYTFRLHE 648
            |.|                                                              
Zfish   774 FTG-------------------------------------------------------------- 776

  Fly   649 HHDYQWQPSQSARGFLSILSNLTAIKIRATYSVQGEAILDDVELQTAHRGAAGHPATWIEQCTCP 713
                                                                        ||.|.
Zfish   777 ------------------------------------------------------------QCECK 781

  Fly   714 EGYLGQFCESCAPGYRHSPARGGPFMPCIPCDCHGHADI----CDSETGRCICQHNTHGDNCDQC 774
            .|..|..|::|.|.:....:.|    .|:||:|..:..:    ||:.||:|.|:.:|.|..||.|
Zfish   782 AGVRGLLCDTCIPHFYSQNSSG----VCLPCNCSLNGSVPGTSCDAVTGQCKCKPHTEGRRCDVC 842

  Fly   775 AKGFY----GNALGGTPNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSRCEQCSDGFFGDPT 835
            ..|::    .|:||                          |..|                     
Zfish   843 RDGYHSLDRSNSLG--------------------------CLPC--------------------- 860

  Fly   836 GLLGEVQTCKSCDCNGNVDPNAVGNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLA-LPHGRC 899
                      .||..|.|  |..|.|::|||:|| |.:|.....|::|.:..:....| ..|| |
Zfish   861 ----------QCDLRGTV--NGSGVCDKTTGQCL-CKNNVESLRCNRCSAHTYNLSSANATHG-C 911

  Fly   900 DRCSCYEAGTEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSG-NGCENCLCDPVGS 963
            ..|.|...||    ...|.||.|:|||.|.|...|||||.|:||:|...:| :.||.|.|..||:
Zfish   912 QPCYCDHIGT----VPATVCDPVSGQCICLPTRYGRDCGTCKPGFFLSEAGLSECEVCECHSVGA 972

  Fly   964 YNSTCDRYSGQCHC-RPGVMGQRCDQCENYFYGFS-SEG-CKPCECDESGSKGFQC-DQNGQCPC 1024
            ....|..:||||.| .|.:.|.|||||::.|:||: |.| |:||.||..|.....| .|.|||.|
Zfish   973 MGQVCAAHSGQCVCAHPSLTGHRCDQCQDLFFGFNPSVGRCEPCGCDPVGGFNGTCHPQTGQCLC 1037

  Fly  1025 NDNVEGRRCDRCKE-------NKYDRHRGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIA-RT 1081
            ...|.|.:||.|.|       |.|   .||...|.     |....|.|.    |:.|..|:: ||
Zfish  1038 KPFVTGDKCDACVEGASFMDPNNY---LGCSKDPQ-----QQPPPLGRV----LNSTTIELSWRT 1090

  Fly  1082 PVTNDDEFEAKLKAVQEKVAVLAQDARDNSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADA 1146
            |                          |:.......|..:.|....|: |..:|......|    
Zfish  1091 P--------------------------DSPNSNALMYTLLRDTQIIHV-SHSQHPFGTMHF---- 1124

  Fly  1147 NGEIDRARQNYTILDQ--ITENAKKELQQALDLLNDEGA---------QALARAKEKSVEFGQQS 1200
               ||.|...||:...  ||.|.:.....::..|....|         ..:.|||..|..|....
Zfish  1125 ---IDTALSPYTLYSYQLITSNIRSNTSSSVVTLRTLSAVPEQEELQLTLVGRAKPNSASFNWTE 1186

  Fly  1201 -------------EQISDISREARALADKLESEA-----------QFDLKNAKDAKDA------- 1234
                         ..|.|:|.|.|.....|::||           .|.||...|...|       
Zfish  1187 PLNTTGPIDNYTLSSIQDLSGEKRIYYTGLQTEATAEELQPFTRYNFSLKACTDGGCARSESLVV 1251

  Fly  1235 ----VEKAHQLAKSAIDL---QLKI---------GTELRSEVGLELSHVKQ----SLGT---VVQ 1276
                :....|.|.....|   |||:         |..:|.|:.::|.:..|    |.||   |..
Zfish  1252 QTAQIPPEQQPAPKITTLGSSQLKVDWEPPVLPNGIIIRYELFMQLLNELQRNASSYGTEQRVFL 1316

  Fly  1277 TS-----KEALRKANEVYDTALTLLNDVNRQTQPE--IDISQLK-----KDAVAANERADELLK- 1328
            :|     :.:|..|||            |..|.||  :.:|.|:     :..|.....|..:|. 
Zfish  1317 SSGWLNPRPSLSSANE------------NALTPPESTVVVSNLQPFSTYRFRVLTVNMAGSVLSD 1369

  Fly  1329 -----------------QITELSNSNGELFADFETEQ------ELTEALLKRAEQQQLED----- 1365
                             |::.:|:|:  |...:||.:      |:||..: ...|:|:.:     
Zfish  1370 WAVGRTAEGVPEYMAPPQVSAVSSSS--LRVSWETPRDKDVRGEVTEYRV-NLHQEQMSNPYAPP 1431

  Fly  1366 --IELLERAKAAHDKAT----KAVEQGDNTLKEANNTYEKLAGFQSDVQRSSESAEKALQTVP 1422
              .::|....|.....|    ||.|:...|:...|.        |..|. ||.::.:.|.:.|
Zfish  1432 IVTQVLYSGSAQEHSYTAGGLKAYEEYSFTVTVCNR--------QGCVS-SSPASGRTLPSAP 1485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_001287009.1 LamNT 61..296 CDD:214532 62/240 (26%)
EGF_Lam 298..347 CDD:238012 19/50 (38%)
Laminin_EGF 359..414 CDD:278482 24/66 (36%)
EGF_Lam 414..458 CDD:214543 15/49 (31%)
Laminin_EGF 461..511 CDD:278482 18/49 (37%)
LamB 572..697 CDD:214597 5/124 (4%)
TNFRSF <721..848 CDD:304602 25/134 (19%)
CRD2 724..771 CDD:276900 15/50 (30%)
EGF_Lam 743..791 CDD:238012 18/55 (33%)
Laminin_EGF 847..897 CDD:278482 17/50 (34%)
Laminin_EGF 902..953 CDD:278482 23/51 (45%)
Laminin_EGF 956..1004 CDD:278482 23/50 (46%)
Laminin_EGF 1004..1050 CDD:278482 20/53 (38%)
V_Alix_like 1122..1443 CDD:187408 87/413 (21%)
Tar 1139..1521 CDD:223910 83/396 (21%)
BAR 1308..1469 CDD:299863 30/155 (19%)
vATP-synt_E 1474..>1629 CDD:304907
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486 70/277 (25%)
EGF_Lam 529..577 CDD:238012 19/52 (37%)
EGF_Lam 586..638 CDD:238012 21/52 (40%)
Laminin_EGF 653..703 CDD:278482 15/49 (31%)
Laminin_EGF 706..756 CDD:278482 18/49 (37%)
EGF_Lam 759..797 CDD:214543 16/214 (7%)
Laminin_EGF 808..857 CDD:278482 17/74 (23%)
EGF_Lam 859..912 CDD:238012 20/87 (23%)
EGF_Lam 913..963 CDD:238012 23/53 (43%)
EGF_Lam 965..1014 CDD:238012 22/48 (46%)
EGF_Lam 1015..1064 CDD:238012 19/51 (37%)
FN3 1177..1253 CDD:238020 15/75 (20%)
FN3 1264..1375 CDD:238020 27/122 (22%)
FN3 1386..1469 CDD:214495 19/93 (20%)
LamG 1537..1699 CDD:238058
LamG 1737..1890 CDD:238058
FN3 1981..2071 CDD:238020
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020
FN3 2352..2443 CDD:238020
FN3 2447..2544 CDD:238020
FN3 2547..2633 CDD:238020
FN3 2635..2733 CDD:238020
FN3 2743..2807 CDD:238020
FN3 2830..2932 CDD:238020
fn3 2939..3014 CDD:278470
FN3 3032..>3099 CDD:238020
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020
FN3 4186..4284 CDD:238020
fn3 4288..4366 CDD:278470
FN3 4382..4465 CDD:238020
FN3 4470..4553 CDD:238020
FN3 4555..4653 CDD:238020
FN3 4679..4753 CDD:238020
fn3 4760..4830 CDD:278470
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.