DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and lama4

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001034154.1 Gene:lama4 / 566796 ZFINID:ZDB-GENE-040724-213 Length:1871 Species:Danio rerio


Alignment Length:994 Identity:245/994 - (24%)
Similarity:395/994 - (39%) Gaps:235/994 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   724 CAPGYRHSPARGGPFMPCIPCDCHGHADICDSETGRCI-CQHNTHGDNCDQCAKGFYGNALGGTP 787
            ||.||..|...     .|:||:|.||||.|:..||.|| |:.:|.||.|:.|...|....|....
Zfish    34 CARGYFLSDQE-----TCLPCNCKGHADSCEDITGICIDCRDHTLGDFCELCEDRFLPVFLPDGT 93

  Fly   788 NDCKRCPCPNDGACLQINEDTVICTE--------CPKGYFGSRCEQCSDGFFGDPTGLLGEVQTC 844
            ..|:.|.||   ..|:.|.....|..        |..||.|..||:|:.|::|:|..|   ..:|
Zfish    94 FMCRPCACP---LSLESNNFAAHCDRRGEFLRCVCQDGYAGHYCERCAPGYYGNPMEL---GNSC 152

  Fly   845 KSCDCNGNVDPNAVGN-CNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCDRCSCYEAG 908
            |.||||||.|||.:.| |:..||:||.|..:|||::|::|..|.:||  |:....|..|.|.:.|
Zfish   153 KKCDCNGNSDPNLIFNECHNVTGKCLNCWGDTAGDNCERCAPGFYGD--AISAKDCQECQCNKCG 215

  Fly   909 TEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSGNGCENCLCDPVGSYNSTCDRYSG 973
            |       ..||..:|.|.|||.|.|:.|..|:.|:....:..||..|.| ...:..:||...:.
Zfish   216 T-------ASCDDRSGVCHCKPGVTGQLCDRCEDGHSGFCTCMGCRRCEC-ASAALRATCHPLTH 272

  Fly   974 QCHCRPGVMGQRCDQCENYFYGFSSEGCKPCECDESGSKGFQCD-QNGQC--------PCNDNVE 1029
            .|.||||..|:.|::|...|:.:|..||:.|:|.|.     .|| ..|:|        .||.:  
Zfish   273 SCQCRPGAGGRYCERCLPGFWDYSPSGCRKCDCPEE-----NCDLHTGECLPELSQISECNIS-- 330

  Fly  1030 GRRCDRCKENKYDRHRGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEAKLK 1094
               ||.|                .:||:.|        :...::|||:: |..|.|         
Zfish   331 ---CDAC----------------IWNLIGD--------IRQSNKTLDQV-RNSVLN--------- 358

  Fly  1095 AVQEKVAVLAQDARDNSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADANGEIDRARQNYT- 1158
                    ::..|..|                   |.::.:..:|.:.||...|    .|:||. 
Zfish   359 --------ISTGAAAN-------------------DRLKYYNYTAHRLQAQFRG----WRKNYAM 392

  Fly  1159 ------ILDQITENAKKELQQALDLLND----------EGAQALARAKEKSVEFGQQSEQISDIS 1207
                  :|::.|:|...::.|..:..|:          |...:..|||..:......:..|.|:.
Zfish   393 MSGDTDVLEEETQNLLTDMDQFAEEENEVQNLGKQVDQETLNSSTRAKTLTANLSSLNVLIEDMI 457

  Fly  1208 REARALADKLESEAQFDLKNAKDAKDAVEKAHQLAKSAIDLQLKIGTELRSEVGLELSHVKQSLG 1272
            |:........|.:.|..|:...:|:..:....:|..|..:   .:.|:..||.. ||....:|..
Zfish   458 RDWELYGVYQELDPQVKLQKLAEAERILGWMRKLNLSPKE---PLATDESSEAH-ELLRRVRSFD 518

  Fly  1273 TVVQTSKEALRKANEVYDTALTLLNDVNRQTQPEIDISQLKKDAVAANERADELLKQITELSNSN 1337
            ..:.|::..|....||          :.|.|...:....|.       .:|::.|||......||
Zfish   519 RNLMTTQGRLPPMQEV----------LGRFTSKLLQAQDLL-------SKAEDALKQAINKYKSN 566

  Fly  1338 GELFADFETEQELTEALLKR--AEQQQLEDIELLERAKAAHDKATKAVEQGDNTLKEANNTYEKL 1400
                          :..|:|  |:||:|:||:         |...:.:......|.|||:|..::
Zfish   567 --------------QLKLQRREAQQQRLKDIQ---------DGVDQTIVNAAAVLSEANHTVLEV 608

  Fly  1401 AGFQSDVQRSSESAEKALQTVP-NIEKEIQNAESLISQAEEALDGANKNANEAKKNAQEAQLKYA 1464
            ....::|:......:.|...:. ..||..|:...|:.:||:..|...::|.|.:.|.:.:.....
Zfish   609 EDVITNVREQHAEIDGARVLLERRTEKISQSDRELVLRAEDHADQLQRHAEEPQHNLKGSDANGH 673

  Fly  1465 EQASKDA-----ELIRR--KANETKVAARNLREE----ADQLNHRVKLTEMDIFK-LEESST--- 1514
            .|.:.:|     .:::.  .||.|.:.|.|:...    .|:|:.::.|......| |.|:|:   
Zfish   674 VQKALNAFNVYDNIVKSVDDANITSLTALNISSRTHGAVDKLSSQLNLMRSQSAKVLNEASSLHF 738

  Fly  1515 ---KDDNLVDDAKRKVGQAKADTQEAQKQIEKANADLTAIKDE-----LENLKDINTGDLDRLEN 1571
               ..:::|.|.|:.:.:.......:.|:|.|...::.||..:     |:..:::..|.|:|...
Zfish   739 QQQDSESIVLDNKKYIEETNEMMDGSSKKIAKIITEINAIHTDRTPKRLQFTQEVAEGTLNRSAE 803

  Fly  1572 RLATVEGEINRV-----NLTGRI--------------EKYREQRTIQKNLIDKYDAELR--ELKD 1615
            .|..|...:.||     |:....              |..::...|...|:.|    ||  |.|.
Zfish   804 VLEKVTPILKRVEQWDGNMKSEAYSAAAFDRTVLSAGEAVKDLSAIVPELLSK----LRVVEEKK 864

  Fly  1616 EVQNI--------GLISKA 1626
            .|.|:        |||::|
Zfish   865 PVNNVTTSIMKIRGLIAQA 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532
EGF_Lam 298..347 CDD:238012
Laminin_EGF 359..414 CDD:395007
EGF_Lam 414..458 CDD:214543
Laminin_EGF 461..511 CDD:395007
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012 20/48 (42%)
EGF_Lam 793..836 CDD:214543 16/50 (32%)
Laminin_EGF 847..897 CDD:395007 25/50 (50%)
Laminin_EGF 902..953 CDD:395007 16/50 (32%)
EGF_Lam 956..1001 CDD:214543 14/44 (32%)
Laminin_EGF 1004..1046 CDD:395007 12/50 (24%)
SMC_prok_B <1054..1621 CDD:274008 123/638 (19%)
lama4NP_001034154.1 Laminin_EGF 99..152 CDD:395007 17/58 (29%)
EGF_Lam 155..207 CDD:238012 25/53 (47%)
EGF_Lam 209..247 CDD:214543 16/44 (36%)
EGF_Lam 256..300 CDD:214543 14/44 (32%)
Laminin_I 356..611 CDD:310534 63/338 (19%)
Cast <490..817 CDD:431111 77/370 (21%)
Laminin_II 790..919 CDD:368703 22/98 (22%)
LamG 893..1067 CDD:238058
LamG 1104..1259 CDD:238058
LamG 1289..1422 CDD:238058
LamG 1535..1672 CDD:238058
LamG 1696..1847 CDD:238058
Blue background indicates that the domain is not in the aligned region.

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