DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and lama4

DIOPT Version :9

Sequence 1:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001034154.1 Gene:lama4 / 566796 ZFINID:ZDB-GENE-040724-213 Length:1871 Species:Danio rerio


Alignment Length:994 Identity:245/994 - (24%)
Similarity:395/994 - (39%) Gaps:235/994 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   724 CAPGYRHSPARGGPFMPCIPCDCHGHADICDSETGRCI-CQHNTHGDNCDQCAKGFYGNALGGTP 787
            ||.||..|...     .|:||:|.||||.|:..||.|| |:.:|.||.|:.|...|....|....
Zfish    34 CARGYFLSDQE-----TCLPCNCKGHADSCEDITGICIDCRDHTLGDFCELCEDRFLPVFLPDGT 93

  Fly   788 NDCKRCPCPNDGACLQINEDTVICTE--------CPKGYFGSRCEQCSDGFFGDPTGLLGEVQTC 844
            ..|:.|.||   ..|:.|.....|..        |..||.|..||:|:.|::|:|..|   ..:|
Zfish    94 FMCRPCACP---LSLESNNFAAHCDRRGEFLRCVCQDGYAGHYCERCAPGYYGNPMEL---GNSC 152

  Fly   845 KSCDCNGNVDPNAVGN-CNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCDRCSCYEAG 908
            |.||||||.|||.:.| |:..||:||.|..:|||::|::|..|.:||  |:....|..|.|.:.|
Zfish   153 KKCDCNGNSDPNLIFNECHNVTGKCLNCWGDTAGDNCERCAPGFYGD--AISAKDCQECQCNKCG 215

  Fly   909 TEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSGNGCENCLCDPVGSYNSTCDRYSG 973
            |       ..||..:|.|.|||.|.|:.|..|:.|:....:..||..|.| ...:..:||...:.
Zfish   216 T-------ASCDDRSGVCHCKPGVTGQLCDRCEDGHSGFCTCMGCRRCEC-ASAALRATCHPLTH 272

  Fly   974 QCHCRPGVMGQRCDQCENYFYGFSSEGCKPCECDESGSKGFQCD-QNGQC--------PCNDNVE 1029
            .|.||||..|:.|::|...|:.:|..||:.|:|.|.     .|| ..|:|        .||.:  
Zfish   273 SCQCRPGAGGRYCERCLPGFWDYSPSGCRKCDCPEE-----NCDLHTGECLPELSQISECNIS-- 330

  Fly  1030 GRRCDRCKENKYDRHRGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEAKLK 1094
               ||.|                .:||:.|        :...::|||:: |..|.|         
Zfish   331 ---CDAC----------------IWNLIGD--------IRQSNKTLDQV-RNSVLN--------- 358

  Fly  1095 AVQEKVAVLAQDARDNSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADANGEIDRARQNYT- 1158
                    ::..|..|                   |.::.:..:|.:.||...|    .|:||. 
Zfish   359 --------ISTGAAAN-------------------DRLKYYNYTAHRLQAQFRG----WRKNYAM 392

  Fly  1159 ------ILDQITENAKKELQQALDLLND----------EGAQALARAKEKSVEFGQQSEQISDIS 1207
                  :|::.|:|...::.|..:..|:          |...:..|||..:......:..|.|:.
Zfish   393 MSGDTDVLEEETQNLLTDMDQFAEEENEVQNLGKQVDQETLNSSTRAKTLTANLSSLNVLIEDMI 457

  Fly  1208 REARALADKLESEAQFDLKNAKDAKDAVEKAHQLAKSAIDLQLKIGTELRSEVGLELSHVKQSLG 1272
            |:........|.:.|..|:...:|:..:....:|..|..:   .:.|:..||.. ||....:|..
Zfish   458 RDWELYGVYQELDPQVKLQKLAEAERILGWMRKLNLSPKE---PLATDESSEAH-ELLRRVRSFD 518

  Fly  1273 TVVQTSKEALRKANEVYDTALTLLNDVNRQTQPEIDISQLKKDAVAANERADELLKQITELSNSN 1337
            ..:.|::..|....||          :.|.|...:....|.       .:|::.|||......||
Zfish   519 RNLMTTQGRLPPMQEV----------LGRFTSKLLQAQDLL-------SKAEDALKQAINKYKSN 566

  Fly  1338 GELFADFETEQELTEALLKR--AEQQQLEDIELLERAKAAHDKATKAVEQGDNTLKEANNTYEKL 1400
                          :..|:|  |:||:|:||:         |...:.:......|.|||:|..::
Zfish   567 --------------QLKLQRREAQQQRLKDIQ---------DGVDQTIVNAAAVLSEANHTVLEV 608

  Fly  1401 AGFQSDVQRSSESAEKALQTVP-NIEKEIQNAESLISQAEEALDGANKNANEAKKNAQEAQLKYA 1464
            ....::|:......:.|...:. ..||..|:...|:.:||:..|...::|.|.:.|.:.:.....
Zfish   609 EDVITNVREQHAEIDGARVLLERRTEKISQSDRELVLRAEDHADQLQRHAEEPQHNLKGSDANGH 673

  Fly  1465 EQASKDA-----ELIRR--KANETKVAARNLREE----ADQLNHRVKLTEMDIFK-LEESST--- 1514
            .|.:.:|     .:::.  .||.|.:.|.|:...    .|:|:.::.|......| |.|:|:   
Zfish   674 VQKALNAFNVYDNIVKSVDDANITSLTALNISSRTHGAVDKLSSQLNLMRSQSAKVLNEASSLHF 738

  Fly  1515 ---KDDNLVDDAKRKVGQAKADTQEAQKQIEKANADLTAIKDE-----LENLKDINTGDLDRLEN 1571
               ..:::|.|.|:.:.:.......:.|:|.|...::.||..:     |:..:::..|.|:|...
Zfish   739 QQQDSESIVLDNKKYIEETNEMMDGSSKKIAKIITEINAIHTDRTPKRLQFTQEVAEGTLNRSAE 803

  Fly  1572 RLATVEGEINRV-----NLTGRI--------------EKYREQRTIQKNLIDKYDAELR--ELKD 1615
            .|..|...:.||     |:....              |..::...|...|:.|    ||  |.|.
Zfish   804 VLEKVTPILKRVEQWDGNMKSEAYSAAAFDRTVLSAGEAVKDLSAIVPELLSK----LRVVEEKK 864

  Fly  1616 EVQNI--------GLISKA 1626
            .|.|:        |||::|
Zfish   865 PVNNVTTSIMKIRGLIAQA 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_001287009.1 LamNT 61..296 CDD:214532
EGF_Lam 298..347 CDD:238012
Laminin_EGF 359..414 CDD:278482
EGF_Lam 414..458 CDD:214543
Laminin_EGF 461..511 CDD:278482
LamB 572..697 CDD:214597
TNFRSF <721..848 CDD:304602 46/132 (35%)
CRD2 724..771 CDD:276900 22/47 (47%)
EGF_Lam 743..791 CDD:238012 20/48 (42%)
Laminin_EGF 847..897 CDD:278482 25/50 (50%)
Laminin_EGF 902..953 CDD:278482 16/50 (32%)
Laminin_EGF 956..1004 CDD:278482 16/47 (34%)
Laminin_EGF 1004..1050 CDD:278482 12/54 (22%)
V_Alix_like 1122..1443 CDD:187408 67/340 (20%)
Tar 1139..1521 CDD:223910 84/419 (20%)
BAR 1308..1469 CDD:299863 34/163 (21%)
vATP-synt_E 1474..>1629 CDD:304907 43/200 (22%)
lama4NP_001034154.1 EGF_Lam 48..>84 CDD:238012 18/35 (51%)
Laminin_EGF 99..152 CDD:278482 17/58 (29%)
EGF_Lam 155..207 CDD:238012 25/53 (47%)
EGF_Lam 209..247 CDD:214543 16/44 (36%)
EGF_Lam 256..300 CDD:214543 14/44 (32%)
Laminin_I 351..611 CDD:283627 64/344 (19%)
SPEC 474..665 CDD:295325 48/234 (21%)
Laminin_II 790..919 CDD:283628 22/98 (22%)
LamG 893..1067 CDD:238058
LamG 1104..1259 CDD:238058
LamG 1289..1422 CDD:238058
LamG 1535..1672 CDD:238058
LamG 1696..1847 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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