DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and si:dkey-202e22.2

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:XP_021335550.2 Gene:si:dkey-202e22.2 / 560497 ZFINID:ZDB-GENE-141215-27 Length:642 Species:Danio rerio


Alignment Length:524 Identity:142/524 - (27%)
Similarity:208/524 - (39%) Gaps:118/524 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 CLPEFINAAYQLQIESTNTCGEQNDNHFCIQTMNQNHKNCEFCKYNDHNPSFLTDLHDP--QSPT 129
            |.|...|.|....:.:..:|...:.:  |:.|..:       |:...|.|:.:.|  ||  ...|
Zfish    37 CSPPMGNLASGRTLFTLTSCCTNSSS--CLPTQPR-------CQAELHPPALMAD--DPFTHPDT 90

  Fly   130 WWQSETMFEGIQHPNYVNLTLHLGKSYDITYVRILFRSPRPESFTIYKRTSESGPWIPYQFYSAT 194
            ||.| |...|.|.    .:.|.|...:.:::|.:||.||||.:..:.:.......|...:.::..
Zfish    91 WWGS-TAASGEQE----EIRLDLETRFCMSHVVMLFCSPRPAAMRLERSQDFGQTWETLKLFARN 150

  Fly   195 CRDTYSLPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINFERSGELQEWVTA 259
            |.:.:.|||.      ..::.|:|||.||...|...||:.|.:: |..|||....|.:....:|.
Zfish   151 CTEMFGLPDD------VSQSGAVCTSRYSSALPCSRGEVIFRSI-GLGSGIVDPYSPQALSRLTV 208

  Fly   260 TDIRITLDR---------------------LNTFGDEL----FGDSQVLKSYFYAISDIAVGARC 299
            |::||.|.:                     |.|.....    ...|..|.|..:|:..:.....|
Zfish   209 TNLRIQLLKSQQCPISKGQRSIPEQSNPSFLPTVPSRSLKAPIPSSDPLDSAPFAVYSLLAKGTC 273

  Fly   300 KCNGHASKCVPSTGMHGERTL--------VCECRHNTDGPDCDRCLPLYNDLKWK--RSTSTEVN 354
            .|:|||..|:|..  .|:.:|        .|.|.|:|.|..|:||..||||..|:  ..:|.|.|
Zfish   274 LCHGHAEHCLPEN--EGQDSLQQSNVVSGKCVCAHHTAGDHCERCALLYNDKPWRAANGSSGESN 336

  Fly   355 ECKACNCNGLADKCFFDANLFNRTG--HGGHCLDCRENRDGPNCERCKENFY------MRDDGYC 411
            .|:.|.|:|.::.|.|...::..||  .||.|..|:.|..|..|:||:..::      :.....|
Zfish   337 SCQKCECHGHSESCHFSQRVWLSTGGISGGVCDHCQHNTVGRRCQRCRTGYHRHPARPLNSPHAC 401

  Fly   412 VNCACDPVGSRSLQ-------CNSH-GKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGC----- 463
            ..|.|||.||..:.       |:.. |:|.|||||.|..|..|...::.||..||:.|.|     
Zfish   402 TRCWCDPAGSVLVHSADEMPWCHPRSGQCHCKPGVGGTTCSHCLPGHWGFGEEGCKPCVCPLTCD 466

  Fly   464 -------DSGGSHQ--NTP------------------ACDTE--------TGICFCKENVEGRRC 493
                   ||.||.:  |.|                  |...|        ||.|.|||.......
Zfish   467 PITGHCLDSKGSVRLYNVPIGGKIPELSHFKPQEDERAWPKELAVSALYFTGKCSCKEKKLKSAA 531

  Fly   494 NECK 497
            :.||
Zfish   532 DLCK 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532 60/255 (24%)
EGF_Lam 298..347 CDD:238012 22/58 (38%)
Laminin_EGF 359..414 CDD:395007 17/62 (27%)
EGF_Lam 414..458 CDD:214543 19/51 (37%)
Laminin_EGF 461..511 CDD:395007 18/77 (23%)
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012
EGF_Lam 793..836 CDD:214543
Laminin_EGF 847..897 CDD:395007
Laminin_EGF 902..953 CDD:395007
EGF_Lam 956..1001 CDD:214543
Laminin_EGF 1004..1046 CDD:395007
SMC_prok_B <1054..1621 CDD:274008
si:dkey-202e22.2XP_021335550.2 None
Blue background indicates that the domain is not in the aligned region.

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