DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB2 and NetA

DIOPT Version :9

Sequence 1:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001285243.1 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster


Alignment Length:763 Identity:251/763 - (32%)
Similarity:329/763 - (43%) Gaps:190/763 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 PALECYDPYGRPQKCLPEFINAAYQLQIESTNTCGEQNDNHFCIQTMNQNH-KNCEFCKYNDHNP 116
            |...||:....|:.|:|:|:||||...:.:::|||......:|   ..|:| ::|..|...|...
  Fly    36 PEDPCYNKAHEPRACIPDFVNAAYDAPVVASSTCGSSGAQRYC---EYQDHERSCHTCDMTDPLR 97

  Fly   117 SF----LTDLHDPQSPTWWQSETMFEGIQHPNYVNLTLHLGKSYDITYV--RILFRSPRPESFTI 175
            ||    ||||::..:.|.|:||.:   ....:.|.|||.|||.:::|||  ::...:|||:|..|
  Fly    98 SFPARSLTDLNNSNNVTCWRSEPV---TGSGDNVTLTLSLGKKFELTYVILQLCPHAPRPDSMVI 159

  Fly   176 YKRTSESGPWIPYQFYSATCRDTYSLPDSRAI-RKGEGEAHALCTSEYSDISPLRDGEIAFSTLE 239
            ||.|.....|.|:||:|:.||..:..|..::. |..|.||..      ||::......|||||||
  Fly   160 YKSTDHGLSWQPFQFFSSQCRRLFGRPARQSTGRHNEHEARC------SDVTRPLVSRIAFSTLE 218

  Fly   240 GRPSGINFERSGELQEWVTATDIRITLDRL----------------------------------N 270
            ||||..:.:.|..||:||||||||:...||                                  |
  Fly   219 GRPSSRDLDSSPVLQDWVTATDIRVVFHRLQRPDPQALLSLEAGGATDLASGKYSVPLANGPAGN 283

  Fly   271 TFGDELFGDSQVLKS-YFYAISDIAVGARCKCNGHASKCVPSTGMHGERTLVCECRHNTDGPDCD 334
            .....|.||.....| ..|||||.:||.|||||||||||  ||...|:  |.|||.|||.|.||:
  Fly   284 NIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKC--STDASGQ--LNCECSHNTAGRDCE 344

  Fly   335 RCLPLYNDLKWKRSTSTEVNECKACNCNGLADKCFFDANLF--NRTGHGGHCLDCRENRDGPNCE 397
            ||.|.:.|..|.|:|:.|.||||.||||..|.:|.|:..:|  ::...||.|.:||.:..|.||.
  Fly   345 RCKPFHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCH 409

  Fly   398 RCKENFYMRD-------DGYCVNCACDPVGSRSLQCNS-HGKCQCKPGVTGDKCDRCDNNYYQFG 454
            :|||.|| ||       ...|..|.|.|:||....||| .|:|.||.||||..|:||...|.|..
  Fly   410 QCKEGFY-RDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPCKDGVTGLTCNRCARGYQQSR 473

  Fly   455 PHGCQQC---------GCDSGGSHQNT-PACDTETGICFCKENVEGRRCNECKPGFFNLDKNNRF 509
            .| ...|         ..|:    ||| |..|..                |..||... |:|...
  Fly   474 SH-IAPCIKQPPRMINMLDT----QNTAPEPDEP----------------ESSPGSGG-DRNGAA 516

  Fly   510 GCTPCFCYGHTS---ECMTAPGYSIVSVTS-NFNKFKERWTAADLNQREVDIKYNQYSRSIGTTA 570
            |......|..|.   ||    |...||... |.|||.:|             .|...::.||...
  Fly   517 GMAAQSQYYRTEGGREC----GKCRVSTKRLNLNKFCKR-------------DYAIMAKVIGRDT 564

  Fly   571 QGNEHVYFQAPDRFLGDQRASYNRDLKFKLQLVGQVANTGVSDVILEGAGSRISLPIFAQGNGIP 635
             .:|.|..:...|.:....|.|..|         ||.           .||..|          |
  Fly   565 -SSEAVSREVQRRAMDPDVADYEMD---------QVQ-----------PGSARS----------P 598

  Fly   636 DQGVKEYTFRLHEHHDYQWQPSQSARGFLSILSNLTA--IKIRATY--SVQGEAI----LDDVEL 692
            ..||.|:     :..||. .|:.:.||     |.:..  ::|:|.:  |..||:.    :..:..
  Fly   599 ITGVYEF-----QAADYP-NPNPNPRG-----SEMERFDLQIQAVFKRSRPGESSGAGNVYGMPN 652

  Fly   693 QTAHRGAAGHPATWI-----EQCTCP-----EGY--LGQFCESCAPGY 728
            .|..||    |.|||     .:|.||     ..|  ||:..|: .|||
  Fly   653 TTLKRG----PMTWIIPTKDLECRCPRIRVNRSYLILGRDSEA-PPGY 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_001287009.1 LamNT 61..296 CDD:214532 93/277 (34%)
EGF_Lam 298..347 CDD:238012 29/48 (60%)
Laminin_EGF 359..414 CDD:278482 24/63 (38%)
EGF_Lam 414..458 CDD:214543 22/44 (50%)
Laminin_EGF 461..511 CDD:278482 12/59 (20%)
LamB 572..697 CDD:214597 27/132 (20%)
TNFRSF <721..848 CDD:304602 4/8 (50%)
CRD2 724..771 CDD:276900 3/5 (60%)
EGF_Lam 743..791 CDD:238012
Laminin_EGF 847..897 CDD:278482
Laminin_EGF 902..953 CDD:278482
Laminin_EGF 956..1004 CDD:278482
Laminin_EGF 1004..1050 CDD:278482
V_Alix_like 1122..1443 CDD:187408
Tar 1139..1521 CDD:223910
BAR 1308..1469 CDD:299863
vATP-synt_E 1474..>1629 CDD:304907
NetANP_001285243.1 LamNT 44..280 CDD:214532 83/247 (34%)
EGF_Lam 312..357 CDD:238012 29/48 (60%)
EGF_Lam 369..426 CDD:238012 23/57 (40%)
EGF_Lam 431..479 CDD:238012 22/48 (46%)
NTR_netrin-1_like 545..723 CDD:239634 50/211 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445143
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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