DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB2 and lama5

DIOPT Version :9

Sequence 1:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:XP_009294934.1 Gene:lama5 / 321243 ZFINID:ZDB-GENE-030131-9823 Length:3665 Species:Danio rerio


Alignment Length:2886 Identity:531/2886 - (18%)
Similarity:814/2886 - (28%) Gaps:1455/2886 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SHSGSSTARLLLIGVLFASCSTAILGAQRPPINSAGGHELRGTTFMPALECYDPYGRPQKCLPEF 71
            |...|.|..|:.:.:|..   |..|.||..|:|...|..|.                     |.:
Zfish     6 SGRASRTPVLVFLPLLLL---TGTLTAQELPVNGVNGFSLH---------------------PPY 46

  Fly    72 INAAYQLQIESTNTCG-EQND----NHFC-----------IQTMNQNHKNCEFCKYNDHNPSFLT 120
            .|.|...:|.:|.||| ::|:    :.:|           .||:...:  |:.|...|.|.:...
Zfish    47 FNLAEGTKITATATCGVDENEQPIQDLYCKLVGGPVSGDPSQTIQGQY--CDICSSQDTNRAHPI 109

  Fly   121 DLHDPQSPTWWQSETMFEGIQHPNYVNLTLHLGKSYDITYVRILF-RSPRPESFTIYKRTSESGP 184
            ......:..||||..:....:| |.||:||.||:.:.:.||.|.| .||||:.:.:.:.......
Zfish   110 SNAIDGTERWWQSPPLSRSAKH-NQVNVTLDLGQLFHVAYVLIKFANSPRPDLWVLERSIDFGKT 173

  Fly   185 WIPYQFYSATCRDTYSLPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINFER 249
            :.|:||::::.||.......|.|.:...:...:||:|||.|.||.:|||..|.:.|||..:||..
Zfish   174 YQPWQFFASSKRDCIERFGQRTIERIYHDDDVICTTEYSRIVPLENGEIVVSLVNGRPGAMNFSY 238

  Fly   250 SGELQEWVTATDIRITLDRLNTFGDELFG----DSQVLKSYFYAISDIAVGARCKCNGHASKCVP 310
            |..|:|:..||:||:...|.||....|.|    |..|.:.|:|:|.||::|.||.|||||..| .
Zfish   239 SPVLREFTKATNIRLRFLRTNTLLGHLMGKTLRDPTVTRRYYYSIKDISIGGRCVCNGHAEAC-N 302

  Fly   311 STGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRSTSTEVNECKACNCNGLADKCFFDANLF 375
            :...:....|.|:|:|||.|..||||.|.:|...||.:|:...|||:.|||:..:.:|::|..:.
Zfish   303 AQDPNDPYKLQCDCQHNTCGTSCDRCCPGFNQFPWKPATTYSANECEPCNCHRHSSECYYDPEID 367

  Fly   376 NRTGH---------GGHCLDCRENRDGPNCERCKENFYMRDD----------------------- 408
            .|...         ||.|::|:.:..|.|||||...:|...|                       
Zfish   368 QRRSSLDMQGEYNGGGVCVECQHHTTGVNCERCIPGYYRSPDHPLESPFACSKCQCESEFTEGTC 432

  Fly   409 ----------------------------------------------------------------- 408
                                                                             
Zfish   433 EDRTGRCYCKPNYTGENCDQCAEGYEHFPECYQVLINGEVRPAGENIIDCECNAAGTEGNSCRPD 497

  Fly   409 ----------------------------------------------------------------- 408
                                                                             
Zfish   498 PRTNTCVCKPEFTGEHCDTCSHGYFSINCQRCQCSGQGCLDGSCDAVTGQCVCRSGFQGYSCEQC 562

  Fly   409 --GY-----CVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQF------------- 453
              ||     |..|.|..|||....|:..|:|.|:|..||.:||:|.:.::.:             
Zfish   563 APGYFNYPLCQYCGCSVVGSIPEMCDPAGRCLCRPEFTGPRCDQCQSGFHSYPNCQVCTCDPRTS 627

  Fly   454 ------------------GPH-------------------------------------------- 456
                              ||.                                            
Zfish   628 LDSSCSELDQCNCRPNYSGPRCQQCAPGYYSYPSCTPCDCSVEGSRSSSCDPVSGQCVCLPNIEG 692

  Fly   457 ----------------------------------------------------------------- 456
                                                                             
Zfish   693 QRCDSCSPGSYGFPLCQLGTCNPAGSVHNDILPTVGSCVCRPYVEGVACERCKPLYWNLSPDTIY 757

  Fly   457 -----------------------------------------------------GCQQCGCDSGGS 468
                                                                 |||.|.||.|||
Zfish   758 GCSTCDCNTAGTLSEVAECTQRTGQCFCKPNVCSGTCNVCKDGFFNLQKDSYFGCQGCQCDIGGS 822

  Fly   469 ----------------------------------------------------------------- 468
                                                                             
Zfish   823 VGQACDERYGRCRCRPNVEGPKCKQPRPDHYFPDLHHMKFEVEDGTTMDGRPVRFGYNPLEFESF 887

  Fly   469 ----------------------------------------------------------------- 468
                                                                             
Zfish   888 SWRGYAQMSPIQPRVLVEVVVGSPDLFHVVLHYVNRGGVDVTGQVSVIEDGRHVLCGNCSEQSKQ 952

  Fly   469 ----------------------------------------------------------------- 468
                                                                             
Zfish   953 IVFAPSSEPTFVNVPQNSFVEPFVLNPGTWTVIIEAEGILLDYLVLLPSAYYEAPILQLQVTEPC 1017

  Fly   469 ----------------------------------------------------------------- 468
                                                                             
Zfish  1018 SYSHTQDASQNCLQYMYLSLDEFPSISSNDASCRSDNHLPRPCHTEKITPRHPSMAICSGNDISV 1082

  Fly   469 ---------------------------------------HQ------------------------ 470
                                                   ||                        
Zfish  1083 GLRGRVPVPGEYVLVVEYASEDQAPQNLTVSVSSAGESTHQEQITLLHCKYSFLCRSVSVDDMKR 1147

  Fly   471 ----------------------------------------------------------------- 470
                                                                             
Zfish  1148 VALFTISANAEIQLIAERSSFFLHKVFLIPRAQFTMEYLKPRVHCISTHGHFAPDSGSCIPSRFQ 1212

  Fly   471 ------------------------------------NTP-------------------------- 473
                                                :||                          
Zfish  1213 NPPQSLVLKEGQASSVAEPILASAPDPSLYADRPMTSTPPTATDNTEHVLLDTSQNAVVYSTRVH 1277

  Fly   474 ----------------------------------------------------------------- 473
                                                                             
Zfish  1278 ALGRYVFILHYHQPLHPTYNVQVFINGGRIWQGNVNASFCPHGYGCRSVVMSENQIILDVTDHEV 1342

  Fly   474 ----------------------------------------------------------------- 473
                                                                             
Zfish  1343 ILTLRVPDRKTLWLDYVLVVPEGSYSSSFLSEELLDKSYDFISNCGQNSFYINPSSASAFCLSSA 1407

  Fly   474 ----------------------------------------------------------------- 473
                                                                             
Zfish  1408 VSLSSFFNNGAVPCGCHEVGAESDTCESFGGQCRCRPNVIGRDCSQCATGYYGFPNCRPCNCGSR 1472

  Fly   474 ----------------------------------------------------------------- 473
                                                                             
Zfish  1473 LCEPVTGECICPPRTLQPDCVTCEPQTFGCHPLVGCEMCNCSRPGVTSMDISCDTNNGQCRCRNN 1537

  Fly   474 --------------------------------ACDTETGICFCKENVEGRRCNECKPGFFNLDKN 506
                                            .||:.||.|.|||||||.||::||.|.|:||..
Zfish  1538 IVGRQCDRCSPGFYGYPNCRPCNCNEAGTEMNVCDSFTGRCLCKENVEGPRCDQCKLGTFHLDPT 1602

  Fly   507 NRFGCTPCFCYGHTSECMTAPGYSIVSVTSNFNKFKER--------WTAADLNQREVDIK----Y 559
            |..|||.|||:|.|..|.::.              |.|        |.....:::||.:.    .
Zfish  1603 NAKGCTKCFCFGATDRCHSSD--------------KRRSEIMDMAGWVLLRSDRQEVPVSTYLDQ 1653

  Fly   560 NQYSRSIGTTAQGNEHVYFQAPDRFLGDQRASYNRDLKFKLQ---LVGQ---VANTGVSDVILEG 618
            :.....:......::.:::.||..:|||:.:||...|:::|.   :.|.   :..|...||||: 
Zfish  1654 DLVEADLSDVPDVSQDLHWHAPQAYLGDKVSSYGGYLRYRLHTQTMRGDAFLMVETIRPDVILK- 1717

  Fly   619 AGSRISLPIFAQGNGIPD---QGV---KEYTFRLHEHHDYQWQPSQSARGFLSILSNLTAIKIRA 677
             |::::|....:....|:   :|:   .|.:|| |.    |...|.|....:.:|..|.:::|||
Zfish  1718 -GNQMTLVYMEREYPSPEDPHEGIVHLVEESFR-HA----QTGNSVSREELMMVLVALESLQIRA 1776

  Fly   678 TYSVQGEAI-LDDVELQTAHRGAAGHPATWIEQCTCPEGYLGQFCESCAPGYRHSPARGGPFM-P 740
            .:|...::: |....|:.|....:|..|..:|.|.||..|||..|:.|||||...  ..|.|: .
Zfish  1777 LHSQSAQSVSLRAAVLEVAENMPSGRHANNVEICLCPGNYLGDSCQQCAPGYYRD--NKGLFLGK 1839

  Fly   741 CIPCDCHGHADICDSETGRCI-CQHNTHGDNCDQCAKGF-YGNALGGTPNDCKRCPCPNDGACLQ 803
            |:||:|:||:|.|...:|.|: |:|||.|::|::|..|| :.|.:.|....|..||||     ||
Zfish  1840 CVPCNCNGHSDQCLDGSGICVNCRHNTAGNHCEKCLGGFHHNNTVDGHSVSCSSCPCP-----LQ 1899

  Fly   804 I--NEDTVICTE--------CPKGYFGSRCEQCSDGFFGDPTGLLGEVQTCKSCDCNGNVDPNAV 858
            :  |...:.|.|        |..||.||:||:|:.|::|:|. ::|  .||:.|:||||.|||.:
Zfish  1900 VASNNFAIRCVEKPNNMRCLCMPGYAGSKCERCAPGYYGNPV-VIG--STCQPCNCNGNSDPNML 1961

  Fly   859 -GNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCDRCSCYEAGTEQDEQSITRCDQV 922
             .:|:..||||..|:|||||.||:.|..|.:||  |:....|.||:|...||       ..||..
Zfish  1962 FSDCHPLTGECQSCMHNTAGPHCEICAPGFYGD--AITAKNCTRCNCSPCGT-------AHCDSH 2017

  Fly   923 TGQCQCKPNVIGRDCGECQPGYFNIRSGNGCENCLCDPVGSYNSTCDRYSGQCHCRPGVMGQRCD 987
            ||||.|||.|:|..|..|:.|.|...|..||..|.||...:....||..:|.|.|:|||.|..|.
Zfish  2018 TGQCHCKPGVVGAQCDRCEHGTFGFDSCTGCRKCDCDASAALVQACDPVNGACACQPGVNGPNCH 2082

  Fly   988 QCENYFYGFSSEGCKPCECDESGSKGFQCD-QNGQCPCNDNVEGRRCDRC-------KENKYDRH 1044
            ||....:.:||.||:.|||     ||.:|| :.|:|.|...:.|::||.|       .:|..|.|
Zfish  2083 QCAPGHWNYSSNGCRKCEC-----KGGRCDPRTGECRCTTGLTGKQCDTCLSQHSVPVQNGADMH 2142

  Fly  1045 RGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEAKLKAVQEKVAVLAQDARD 1109
              |..|..|..::.:  ||.|     :|...:.:|.           :|.::........|..|.
Zfish  2143 --CQPCDSCVMVLLE--DLDR-----ISHFYESVAN-----------QLTSLNASTFAWTQLNRL 2187

  Fly  1110 NSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADANGEIDRARQNYTILD---QITENAKKEL 1171
            |:     :.|::.:.:..:                  |..:|::|...::|:   :|.::..|:|
Zfish  2188 NA-----SIADIANAITNY------------------NSTLDKSRNRASVLEGELEIIDSDIKDL 2229

  Fly  1172 -------QQALDLLNDEGAQALARAKEKSVEFGQQSEQISDISREARALADKLESEAQFDLKNAK 1229
                   |:..|.|.|.......||:|.   ||    .|..|.|:.:.:..::...||.:.: ..
Zfish  2230 EKKASVTQKKKDALEDNINSTHTRAQEL---FG----FIKGIMRDVKDIIQQVNRTAQNETQ-VM 2286

  Fly  1230 DAKDAVEKAHQLAKSAIDLQLKIGTELRSEVGLELSHVKQSLGTVVQTSKEALRKANEVYDTALT 1294
            |.||...|..::.....|::.:         |.:....|         :|..|.:||.:.|   .
Zfish  2287 DEKDLARKIAEVESMLRDMRFR---------GFDYQKNK---------AKNELDQANNLVD---R 2330

  Fly  1295 LLNDVNRQTQPEIDISQLKKDAVAANERADELLKQITELSNSNGELFADFETEQELTEALLKRAE 1359
            ::|::..:|        ...:|||.|.|  ..|||..|      :|   .:....:.||:...|:
Zfish  2331 VINEIANRT--------WNNEAVAENIR--NKLKQFNE------QL---MDLRDAMNEAVNNTAQ 2376

  Fly  1360 --------QQQLEDIELLERAKAAHDKATKAVEQ-----GDNT--------LKEANNTYEKLAGF 1403
                    |:.|||::  ::..:.|:|..:.|.|     .|.|        |:::...||.||. 
Zfish  2377 TVEANNINQKHLEDLQ--KKVNSLHEKYKEVVSQLQMAEDDVTQVNDLLSMLQDSKEDYEHLAA- 2438

  Fly  1404 QSD---------VQRSSESAEKALQTVPNIEKEIQNAESLISQAEEALDGANK--------NANE 1451
            |.|         ||:.:.:|.| :..|...||..:..|.|.:.....:.|:|:        ||:.
Zfish  2439 QLDGARQPLAEKVQKYAPAANK-IPLVEAAEKHAEMLEQLANNLSSLISGSNQDNFIQRALNASR 2502

  Fly  1452 AKKN-------AQEAQLKYAEQASKDAELIRRKANETKVAA-----RNLREEADQLNH------- 1497
            |..|       |:...||..|.||...|.||.|....:.||     ..|.:.|::||:       
Zfish  2503 AYTNIINSVLEAETTALKANETASMALENIRDKDLPAQAAALKNQSTELLKSAEELNNSSQSLKP 2567

  Fly  1498 ---RVKLTEMDIFKLEESSTKD----DNLV----DDAKRKVGQAKADTQEA-------------- 1537
               .:|::.:|..|.:|...:|    .|.:    ||....:..||:..::|              
Zfish  2568 RVDTIKMSLLDAEKKKEKMLQDLKDIQNKLNVSRDDIVNSISAAKSAVEQANNTVANVSGVLAPI 2632

  Fly  1538 QKQIE---KANADLTAIKDELEN-LKDINTG-------------DLDRLENRLATVEGEINRVNL 1585
            |||:|   |...|..|..:::.. |.|.||.             .||||.|  .|.:..    |:
Zfish  2633 QKQLEEWQKQYGDSNATSEDINKALNDANTSVAALSDTLPKLIKKLDRLHN--TTFQPS----NI 2691

  Fly  1586 TGRIEKYREQRTIQKNLIDKYDAELR 1611
            :..|::.|:.....:|..:|....::
Zfish  2692 SDSIQRIRQLIEQARNAANKVSVSMQ 2717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_001287009.1 LamNT 61..296 CDD:214532 79/255 (31%)
EGF_Lam 298..347 CDD:238012 22/48 (46%)
Laminin_EGF 359..414 CDD:278482 21/223 (9%)
EGF_Lam 414..458 CDD:214543 17/236 (7%)
Laminin_EGF 461..511 CDD:278482 31/791 (4%)
LamB 572..697 CDD:214597 35/137 (26%)
TNFRSF <721..848 CDD:304602 53/139 (38%)
CRD2 724..771 CDD:276900 22/48 (46%)
EGF_Lam 743..791 CDD:238012 20/49 (41%)
Laminin_EGF 847..897 CDD:278482 26/50 (52%)
Laminin_EGF 902..953 CDD:278482 20/50 (40%)
Laminin_EGF 956..1004 CDD:278482 19/47 (40%)
Laminin_EGF 1004..1050 CDD:278482 18/53 (34%)
V_Alix_like 1122..1443 CDD:187408 74/360 (21%)
Tar 1139..1521 CDD:223910 102/459 (22%)
BAR 1308..1469 CDD:299863 50/205 (24%)
vATP-synt_E 1474..>1629 CDD:304907 42/192 (22%)
lama5XP_009294934.1 Laminin_N 51..290 CDD:278484 76/241 (32%)
EGF_Lam 291..339 CDD:238012 22/48 (46%)
EGF_Lam 350..413 CDD:238012 18/62 (29%)
EGF_Lam 421..463 CDD:214543 0/41 (0%)
EGF_Lam 482..529 CDD:214543 0/46 (0%)
Laminin_EGF 529..577 CDD:278482 4/47 (9%)
Laminin_EGF 575..622 CDD:278482 15/46 (33%)
Laminin_EGF 620..667 CDD:278482 2/46 (4%)
EGF_Lam 664..711 CDD:238012 0/46 (0%)
Laminin_EGF 713..759 CDD:278482 0/45 (0%)
Laminin_EGF 762..812 CDD:278482 0/49 (0%)
EGF_Lam 815..858 CDD:238012 6/42 (14%)
Laminin_EGF 1421..1469 CDD:278482 0/47 (0%)
Laminin_EGF 1511..1561 CDD:278482 0/49 (0%)
Laminin_EGF 1559..1607 CDD:278482 21/47 (45%)
Laminin_B 1672..1796 CDD:278481 34/130 (26%)
EGF_Lam 1842..1881 CDD:238012 18/38 (47%)
Laminin_EGF 1894..1947 CDD:278482 21/60 (35%)
EGF_Lam 1949..2002 CDD:238012 26/54 (48%)
Laminin_EGF 2004..2048 CDD:278482 20/50 (40%)
Laminin_EGF 2051..2099 CDD:278482 19/47 (40%)
Laminin_EGF 2099..>2128 CDD:278482 13/33 (39%)
mycoplas_twoTM 2158..>2351 CDD:275320 48/270 (18%)
Laminin_I 2171..2429 CDD:283627 64/330 (19%)
COG1340 2319..2558 CDD:224259 65/264 (25%)
BAR 2383..2637 CDD:299863 62/257 (24%)
Laminin_II 2611..2741 CDD:283628 25/113 (22%)
LamG 2757..2896 CDD:214598
LamG 2932..3075 CDD:238058
LamG 3110..3249 CDD:238058
LamG 3320..3466 CDD:238058
LamG 3490..3642 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.