DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB2 and Lama4

DIOPT Version :9

Sequence 1:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001296376.1 Gene:Lama4 / 309816 RGDID:1560062 Length:1817 Species:Rattus norvegicus


Alignment Length:995 Identity:224/995 - (22%)
Similarity:385/995 - (38%) Gaps:317/995 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   715 GYLGQFCESCAPG-YRHSPARGGPFMPCIPCDCHGHADICDSETGRCI-CQHNTHGDNCDQCAKG 777
            |.|....|.|..| :|.|...      |.||||:|::..|...:|.|: ||.||.|::|::|..|
  Rat    58 GRLPPAAERCDAGFFRTSSGE------CSPCDCNGNSHECLDGSGFCLHCQRNTTGEHCERCLAG 116

  Fly   778 FYGNALGGTPNDCKRCPCPND------GACLQINEDTVICTECPKGYFGSRCEQCSDGFFGDPTG 836
            :.|:::.|.|..|:.||||..      .:|.:.| ..|.|. |.:.|.|..||:|:.|::|:|. 
  Rat   117 YIGDSIRGAPRFCQPCPCPLPHLANFAESCFRKN-GAVRCM-CKENYAGPNCERCAPGYYGNPL- 178

  Fly   837 LLGEVQTCKSCDCNGNVDPNAV-GNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCD 900
            |:|  .|||.|||:||.|||.: .:|:..||:|..|:.||.|..|::|..|::||  |.....|.
  Rat   179 LIG--STCKKCDCSGNSDPNLIFEDCDEITGQCRNCLRNTTGFKCERCAPGYYGD--ARIAKNCA 239

  Fly   901 RCSCYEAGTEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSGNGCENCLCDPVGSYN 965
            .|:|  .|..        ||.|||:|             .:.|:   ....||:.|:.|......
  Rat   240 VCNC--GGGP--------CDSVTGEC-------------LEEGF---ELPTGCDKCVWDLTDDLR 278

  Fly   966 ----STCDRYSGQCHCRPGVMGQRCDQCENYFYGFSSEGCKPCECDESGSKGFQCDQNGQCPCND 1026
                |..:..||......|....|                            ...|.|.....  
  Rat   279 LAALSIEESKSGLLSVSSGAAAHR----------------------------HVTDMNSTIHL-- 313

  Fly  1027 NVEGRRCDRCKENKYDRHRGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEA 1091
             ::.|..:|  ||:|                    .|.:.::.|...||    |:.:::.:|.:.
  Rat   314 -LKTRLSER--ENQY--------------------TLRKIQINNSENTL----RSLLSDVEELDE 351

  Fly  1092 KLKAVQEKVAVLAQDARDNSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADANGEID----- 1151
            |......|..::.:::.|......|    :::..|...|.::|  :::.......|.|:.     
  Rat   352 KGSRASRKGTLVEKESTDTIDQATQ----LVEQAHSMRDKIQE--INSKMLYYGENQELGPEEIA 410

  Fly  1152 -------------RARQNYTILDQITENAKKELQQALDLLNDEGAQALARAKEKSVEFGQQSEQI 1203
                         |:||.:....::.:....|:|:.|                      .|:|..
  Rat   411 EKLVLAQKMLDEIRSRQPFLTHRELVDEEADEVQELL----------------------SQAENW 453

  Fly  1204 SDISREARALAD-KLESEAQFDLKNAK--DAKDAVEKAHQLAKSAIDLQLKIGTELRSEVGLELS 1265
            ..:..:.|:|.. .||   |.|..|||  |.::::.:|....:.|.|:...|.::.|       .
  Rat   454 QRLHNDTRSLLPVVLE---QLDDYNAKLSDLQESINQALDHVRDAEDMNRAITSKQR-------D 508

  Fly  1266 HVKQSLGTVVQTSKEALRKANEVYDTALTLLNDVNRQTQPEIDISQLKKDAVAANERADELLKQI 1330
            |.||         .|.:::..|...|:|:|..|  ....|.:.:.:|           ||::|  
  Rat   509 HEKQ---------HERVKEQMEAVGTSLSLSAD--SLITPRLTLEEL-----------DEIIK-- 549

  Fly  1331 TELSNSNGELFADFE-TEQELTEALLKRAEQQQLEDIELLERAKAAHDKATKAVEQGDNTLKEAN 1394
                |::| ::|:.: .:.||         |.:|.::..|     :||...:||:...|..:|||
  Rat   550 ----NASG-IYAEIDGAKNEL---------QGKLSNLSNL-----SHDLVQEAVDHAYNLQQEAN 595

  Fly  1395 ----------------------NTYEKLAGFQSDVQRSSESA----EKALQTVPNIEKEI----Q 1429
                                  |.||.:|.:.|:...::|.|    ::....|..|:.:|    .
  Rat   596 ELSRNLHSSDMNGLVQKALDASNVYENIANYVSEANETAELALNITDRIYDAVSGIDTQIVYHKD 660

  Fly  1430 NAESLISQAEEALDGANKNANEAKKNAQEAQLKYAEQASKDAELIRRKANETKVAARNLREEADQ 1494
            .:::|::||.|....|:.:::||          .|:.:.:....:.||.        .||:    
  Rat   661 ESDNLLNQARELQAKADSSSDEA----------VADTSRRVGGALWRKG--------ALRD---- 703

  Fly  1495 LNHRVKLTEMDIFKLEESSTKDDNLVDDAKRKVGQAKADTQEAQK-------------------- 1539
                 ||||. :.:|:.:..      .||.:::||.|...:||.|                    
  Rat   704 -----KLTEA-VKQLQAAER------GDAHQRLGQTKLIIEEANKTTMAVQQVTTPMANNLSNWS 756

  Fly  1540 ---QIEKANADLTAI---KDELENLKDINTGDLDRLENRLATVEGEINRVNLTGRIEKYREQRTI 1598
               |...::|..||:   :|.:.||.::    :.||..:|.|||.:....|::..|::.||    
  Rat   757 QNLQTFDSSAYNTAVNSARDAVRNLTEV----VPRLLGQLRTVEQKRPASNVSASIQRVRE---- 813

  Fly  1599 QKNLIDKYDAELRELKDEVQ 1618
               ||    |:.|.:..::|
  Rat   814 ---LI----AQTRSVASKIQ 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_001287009.1 LamNT 61..296 CDD:214532
EGF_Lam 298..347 CDD:238012
Laminin_EGF 359..414 CDD:278482
EGF_Lam 414..458 CDD:214543
Laminin_EGF 461..511 CDD:278482
LamB 572..697 CDD:214597
TNFRSF <721..848 CDD:304602 48/134 (36%)
CRD2 724..771 CDD:276900 18/48 (38%)
EGF_Lam 743..791 CDD:238012 19/48 (40%)
Laminin_EGF 847..897 CDD:278482 22/50 (44%)
Laminin_EGF 902..953 CDD:278482 10/50 (20%)
Laminin_EGF 956..1004 CDD:278482 7/51 (14%)
Laminin_EGF 1004..1050 CDD:278482 7/45 (16%)
V_Alix_like 1122..1443 CDD:187408 72/372 (19%)
Tar 1139..1521 CDD:223910 82/433 (19%)
BAR 1308..1469 CDD:299863 38/191 (20%)
vATP-synt_E 1474..>1629 CDD:304907 39/171 (23%)
Lama4NP_001296376.1 EGF_Lam 81..130 CDD:238012 19/48 (40%)
EGF_Lam 131..185 CDD:238012 20/58 (34%)
EGF_Lam 187..238 CDD:238012 22/52 (42%)
Laminin_I 289..547 CDD:283627 61/374 (16%)
SPEC 314..523 CDD:295325 48/281 (17%)
ApoLp-III_like 610..798 CDD:304399 48/225 (21%)
Laminin_II 727..854 CDD:283628 26/115 (23%)
LamG 853..1008 CDD:214598
LamG 1044..1202 CDD:238058
LamG 1232..1372 CDD:238058
LamG 1483..1618 CDD:238058
LamG 1642..1793 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.