DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB2 and Lama4

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001296376.1 Gene:Lama4 / 309816 RGDID:1560062 Length:1817 Species:Rattus norvegicus


Alignment Length:995 Identity:224/995 - (22%)
Similarity:385/995 - (38%) Gaps:317/995 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   715 GYLGQFCESCAPG-YRHSPARGGPFMPCIPCDCHGHADICDSETGRCI-CQHNTHGDNCDQCAKG 777
            |.|....|.|..| :|.|...      |.||||:|::..|...:|.|: ||.||.|::|::|..|
  Rat    58 GRLPPAAERCDAGFFRTSSGE------CSPCDCNGNSHECLDGSGFCLHCQRNTTGEHCERCLAG 116

  Fly   778 FYGNALGGTPNDCKRCPCPND------GACLQINEDTVICTECPKGYFGSRCEQCSDGFFGDPTG 836
            :.|:::.|.|..|:.||||..      .:|.:.| ..|.|. |.:.|.|..||:|:.|::|:|. 
  Rat   117 YIGDSIRGAPRFCQPCPCPLPHLANFAESCFRKN-GAVRCM-CKENYAGPNCERCAPGYYGNPL- 178

  Fly   837 LLGEVQTCKSCDCNGNVDPNAV-GNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCD 900
            |:|  .|||.|||:||.|||.: .:|:..||:|..|:.||.|..|::|..|::||  |.....|.
  Rat   179 LIG--STCKKCDCSGNSDPNLIFEDCDEITGQCRNCLRNTTGFKCERCAPGYYGD--ARIAKNCA 239

  Fly   901 RCSCYEAGTEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSGNGCENCLCDPVGSYN 965
            .|:|  .|..        ||.|||:|             .:.|:   ....||:.|:.|......
  Rat   240 VCNC--GGGP--------CDSVTGEC-------------LEEGF---ELPTGCDKCVWDLTDDLR 278

  Fly   966 ----STCDRYSGQCHCRPGVMGQRCDQCENYFYGFSSEGCKPCECDESGSKGFQCDQNGQCPCND 1026
                |..:..||......|....|                            ...|.|.....  
  Rat   279 LAALSIEESKSGLLSVSSGAAAHR----------------------------HVTDMNSTIHL-- 313

  Fly  1027 NVEGRRCDRCKENKYDRHRGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEA 1091
             ::.|..:|  ||:|                    .|.:.::.|...||    |:.:::.:|.:.
  Rat   314 -LKTRLSER--ENQY--------------------TLRKIQINNSENTL----RSLLSDVEELDE 351

  Fly  1092 KLKAVQEKVAVLAQDARDNSGDGGQTYAEVIDDLHKHLDSVREHLVSADKFQADANGEID----- 1151
            |......|..::.:::.|......|    :::..|...|.::|  :::.......|.|:.     
  Rat   352 KGSRASRKGTLVEKESTDTIDQATQ----LVEQAHSMRDKIQE--INSKMLYYGENQELGPEEIA 410

  Fly  1152 -------------RARQNYTILDQITENAKKELQQALDLLNDEGAQALARAKEKSVEFGQQSEQI 1203
                         |:||.:....::.:....|:|:.|                      .|:|..
  Rat   411 EKLVLAQKMLDEIRSRQPFLTHRELVDEEADEVQELL----------------------SQAENW 453

  Fly  1204 SDISREARALAD-KLESEAQFDLKNAK--DAKDAVEKAHQLAKSAIDLQLKIGTELRSEVGLELS 1265
            ..:..:.|:|.. .||   |.|..|||  |.::::.:|....:.|.|:...|.::.|       .
  Rat   454 QRLHNDTRSLLPVVLE---QLDDYNAKLSDLQESINQALDHVRDAEDMNRAITSKQR-------D 508

  Fly  1266 HVKQSLGTVVQTSKEALRKANEVYDTALTLLNDVNRQTQPEIDISQLKKDAVAANERADELLKQI 1330
            |.||         .|.:::..|...|:|:|..|  ....|.:.:.:|           ||::|  
  Rat   509 HEKQ---------HERVKEQMEAVGTSLSLSAD--SLITPRLTLEEL-----------DEIIK-- 549

  Fly  1331 TELSNSNGELFADFE-TEQELTEALLKRAEQQQLEDIELLERAKAAHDKATKAVEQGDNTLKEAN 1394
                |::| ::|:.: .:.||         |.:|.::..|     :||...:||:...|..:|||
  Rat   550 ----NASG-IYAEIDGAKNEL---------QGKLSNLSNL-----SHDLVQEAVDHAYNLQQEAN 595

  Fly  1395 ----------------------NTYEKLAGFQSDVQRSSESA----EKALQTVPNIEKEI----Q 1429
                                  |.||.:|.:.|:...::|.|    ::....|..|:.:|    .
  Rat   596 ELSRNLHSSDMNGLVQKALDASNVYENIANYVSEANETAELALNITDRIYDAVSGIDTQIVYHKD 660

  Fly  1430 NAESLISQAEEALDGANKNANEAKKNAQEAQLKYAEQASKDAELIRRKANETKVAARNLREEADQ 1494
            .:::|::||.|....|:.:::||          .|:.:.:....:.||.        .||:    
  Rat   661 ESDNLLNQARELQAKADSSSDEA----------VADTSRRVGGALWRKG--------ALRD---- 703

  Fly  1495 LNHRVKLTEMDIFKLEESSTKDDNLVDDAKRKVGQAKADTQEAQK-------------------- 1539
                 ||||. :.:|:.:..      .||.:::||.|...:||.|                    
  Rat   704 -----KLTEA-VKQLQAAER------GDAHQRLGQTKLIIEEANKTTMAVQQVTTPMANNLSNWS 756

  Fly  1540 ---QIEKANADLTAI---KDELENLKDINTGDLDRLENRLATVEGEINRVNLTGRIEKYREQRTI 1598
               |...::|..||:   :|.:.||.::    :.||..:|.|||.:....|::..|::.||    
  Rat   757 QNLQTFDSSAYNTAVNSARDAVRNLTEV----VPRLLGQLRTVEQKRPASNVSASIQRVRE---- 813

  Fly  1599 QKNLIDKYDAELRELKDEVQ 1618
               ||    |:.|.:..::|
  Rat   814 ---LI----AQTRSVASKIQ 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532
EGF_Lam 298..347 CDD:238012
Laminin_EGF 359..414 CDD:395007
EGF_Lam 414..458 CDD:214543
Laminin_EGF 461..511 CDD:395007
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012 19/48 (40%)
EGF_Lam 793..836 CDD:214543 17/48 (35%)
Laminin_EGF 847..897 CDD:395007 22/50 (44%)
Laminin_EGF 902..953 CDD:395007 10/50 (20%)
EGF_Lam 956..1001 CDD:214543 7/48 (15%)
Laminin_EGF 1004..1046 CDD:395007 7/41 (17%)
SMC_prok_B <1054..1621 CDD:274008 125/643 (19%)
Lama4NP_001296376.1 EGF_Lam 81..130 CDD:238012 19/48 (40%)
EGF_Lam 131..185 CDD:238012 20/58 (34%)
EGF_Lam 187..238 CDD:238012 22/52 (42%)
Laminin_I 291..547 CDD:310534 59/372 (16%)
mukB <434..>742 CDD:235316 85/416 (20%)
Laminin_II 727..854 CDD:368703 26/115 (23%)
LamG 853..1008 CDD:214598
LamG 1044..1202 CDD:238058
LamG 1232..1372 CDD:238058
LamG 1483..1618 CDD:238058
LamG 1642..1793 CDD:238058
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.