DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and Lamb3

DIOPT Version :9

Sequence 1:NP_001287009.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001094311.1 Gene:Lamb3 / 305078 RGDID:1562668 Length:1172 Species:Rattus norvegicus


Alignment Length:1721 Identity:332/1721 - (19%)
Similarity:547/1721 - (31%) Gaps:725/1721 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 ILGAQRPPINSAGGHELRGTTFMPALECYDPYGRPQKCLPEFINAAYQLQIESTNTCGEQNDNHF 94
            :|.||:|....|               ||.|.|       :.:....|| :.:::|||......:
  Rat    15 LLCAQQPCSRGA---------------CYPPVG-------DLLIGRTQL-LRASSTCGLTKPETY 56

  Fly    95 CIQTMNQNHKNCEFC------KYNDHNPSFLTDLHDPQSPTWWQSETMFEGIQHPNYVNLTLHLG 153
            |.|......|.|: |      .||.|....:.....|.  .||||:      ...:.|:|.|.|.
  Rat    57 CTQYGQWQMKCCK-CDSRLPRNYNSHRVENVVSSSGPM--RWWQSQ------NDVSPVSLQLDLD 112

  Fly   154 KSYDITYVRILFRSPRPESFTIYKRTSESG-PWIPYQFYSATCRDTYSLPDSRAIRKGEGEAHAL 217
            |...:..:.:.|:...|....| :|:|:.| .|..||:.:..|..|:.            :.|..
  Rat   113 KRMQLQDIMMDFKGLMPAGMLI-ERSSDFGKTWRVYQYLATDCASTFP------------QVHQG 164

  Fly   218 CTSEYSDI----------SPLRDGEIAFSTLEGRPSGINFERSGELQEWVTATDIRITLDRLNTF 272
            ....:.|:          ..|..|::..:.:: ..|.|...:|.::||....|::|:...:|...
  Rat   165 QPKNWQDVRCRPLSQRPNGHLTGGKVQLNLMD-LASAIPASQSKKIQELGDITNLRVNFTKLAPV 228

  Fly   273 GDELFGDSQVLKSYFYAISDIAVGARCKCNGHASKCVPST-GMHGERTL-----VCECRHNTDGP 331
            ...    .....|.::|:|.:.:...|.|:|||.:|.|:. |..|..|.     ||.|:|||.||
  Rat   229 PQR----GSYPPSAYFAVSQLRLQGSCFCHGHADRCAPNPGGPTGSTTAVQVNDVCVCQHNTAGP 289

  Fly   332 DCDRCLPLYNDLKWKRSTSTEVNECKACNCNGLADKCFFDANLF--NRTGHGGHCLDCRENRDGP 394
            :||||.|.||:..|:.:...:::||:.|:|||.::.|.||..:|  ::...||.|.:|:::.:|.
  Rat   290 NCDRCAPFYNNRPWRPAEGQDIHECQRCDCNGHSETCHFDPAVFAASQGTSGGVCDNCQDHTEGK 354

  Fly   395 NCERCKENFYM-RDDG-----YCVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQF 453
            |||||:.:::. |..|     .|:.|.|||.|:                |.|..|||.       
  Rat   355 NCERCQLHYFRNRRPGAPIHETCIPCECDPDGA----------------VPGAPCDRL------- 396

  Fly   454 GPHGCQQCGCDSGGSHQNTPACDTETGICFCKENVEGRRCNECKPGFFNLDKNNRFGCTPCFCYG 518
                                     ||.|.||::|:|.||:.|||||..|...|..||.||.|  
  Rat   397 -------------------------TGQCVCKDHVQGERCDLCKPGFTGLTFANPQGCHPCDC-- 434

  Fly   519 HTSECMTAPGYSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDR 583
                                                                             
  Rat   435 ----------------------------------------------------------------- 434

  Fly   584 FLGDQRASYNRDLKFKLQLVGQVANTGVSDVILEGAGSRISLPIFAQGNGIPDQGVKEYTFRLHE 648
                                                                             
  Rat   435 ----------------------------------------------------------------- 434

  Fly   649 HHDYQWQPSQSARGFLSILSNLTAIKIRATYSVQGEAILDDVELQTAHRGAAGHPATWIEQCTCP 713
                            |||                                              
  Rat   435 ----------------SIL---------------------------------------------- 437

  Fly   714 EGYLGQFCESCAPGYRHSPARGGPFMPCIPCDCHGHADICDSETGRCICQHNTHGDNCDQCAKGF 778
                                                                             
  Rat   438 ----------------------------------------------------------------- 437

  Fly   779 YGNALGGTPNDCKRCPCPNDGACLQINEDTVICTECPKGYFGSRCEQCSDGFFGDPTGLLGEVQT 843
                                                                             
  Rat   438 ----------------------------------------------------------------- 437

  Fly   844 CKSCDCNGNVDPNAVGNCNRTTGECLKCIHNTAGEHCDQCLSGHFGDPLALPHGRCDRCSCYEAG 908
                                                                            |
  Rat   438 ----------------------------------------------------------------G 438

  Fly   909 TEQDEQSITRCDQVTGQCQCKPNVIGRDCGECQPGYFNIRSGNGCENCLCDPVGSYNSTCDRYSG 973
            |.||    ..|::.||:|.|.|||:|..|.:|.|.::.:.||.|||.|.|||..|.:|.|::::|
  Rat   439 TRQD----MPCEEETGRCLCLPNVVGPKCDQCAPSHWKLASGRGCEPCACDPRNSLSSQCNQFTG 499

  Fly   974 QCHCRPGVMGQRCD-----QCENYFYGFSSEGCKPCECDESGSKGFQCDQ-NGQCPCNDNVEGRR 1032
            ||.||.|..|..|.     ||.:..:|..:.||:.|:||..|::|..||: :|:|.|...:.|.|
  Rat   500 QCPCREGFGGLTCSSAAIRQCPDRTHGDVATGCRACDCDFRGTEGPGCDKTSGRCLCRPGLTGPR 564

  Fly  1033 CDRCKENKYDRHRGCIDCPDCYNLVQDAADLHRAKLFNLSQTLDEIARTPVTNDDEFEAKLKAVQ 1097
            ||:|:....||:..|:.|..|:............:|.:|..|.:.:.......|....::|...:
  Rat   565 CDQCQRGYCDRYPVCVACHSCFQAYDTDLQEQAWRLGSLRNTTEGLGTGTGLEDRGLASRLLDAK 629

  Fly  1098 EKVAVLAQDARDNSGDGGQTYAE-VIDDLHKHLDSVREHL----------VSADKFQADANGEID 1151
            .|:..:.|..      ||.:..| .:..:...:.|:|..|          ...:.|..|. |.:|
  Rat   630 SKIEQIRQIL------GGTSVTERDVAQVANAILSIRRTLQGLPLDLPLEEEMESFSGDL-GNLD 687

  Fly  1152 RARQNYTILDQITENAKKELQQALDLLNDEGA-QALARAKEKSVEFGQQSEQISDIS------RE 1209
            |:.....::    ..:|||..:.|..::..|| :.|..|.|:|   .:.::|:||.|      |:
  Rat   688 RSFNRLLLM----YRSKKEQFEKLSSVDPSGAFRMLTMAYEQS---SRAAQQVSDSSSLLSQLRD 745

  Fly  1210 ARALADKLESEA-------------QFDLKNAKDAKDAVEK------------------------ 1237
            :|...:.||.:.             :.::.:..|....:.|                        
  Rat   746 SRREVEGLERQTGEGGAGGAQLMALRLEMASLPDLTPTINKLCGGSRQTACTPGDCPGLLCPQDN 810

  Fly  1238 ----------AHQLAKSAIDLQLKIGTELRSEVGLELSHVKQSLGTVVQTSKEALRKANEVYDTA 1292
                      |...|:.|:.:..::..:||            |..|.:|.:::.:|.|.|   .|
  Rat   811 GTACGSHCRGALPRARGALHMAGQVAEQLR------------SFNTQLQQTRQMIRAAEE---AA 860

  Fly  1293 LTLLNDVNR-QTQPEIDISQLKKDAVAANERADELLKQITELSNSNGEL---FADFETEQELTEA 1353
            ..:.:|..| :||......|:::|.    .|...|::|:      .|.|   ..|..|.|:::||
  Rat   861 SKVQSDAQRLETQVSTSRLQMEEDV----RRTRLLIQQV------RGFLTDPHTDAATIQQVSEA 915

  Fly  1354 LL-------------KRAEQQ----QLEDIEL--------LERAKAAHDKATKA----------- 1382
            :|             |..|.|    :|.:::|        :.||:....:|.||           
  Rat   916 VLALWLPTDSATVLRKMKEIQDIAARLPNVDLVLSQTKQDIARARRLQAEAEKARSRAHVVEGQV 980

  Fly  1383 ------VEQGDNTLKEANNTYEKLAGFQSDVQRSSESAEKALQTVPNIEKEIQNAESLISQAEEA 1441
                  :.||...|:||.:|          :|.:..|.....:.|..:::.:..||.|:...:|.
  Rat   981 DDVVGNLRQGTVALQEAQDT----------MQGTGRSLRLIQERVTEVQQVLVPAERLVKGMKEQ 1035

  Fly  1442 LDGANKNANEAKKNAQEAQLKYAEQASKDAELIRRKANETKVAARNLREEADQLNHRVKLTEMDI 1506
            :.|......|.:..|||.|    .||.|..:|....:|:    |.|.:|..::|..|  .||:. 
  Rat  1036 MSGFWARVKELRHQAQEEQ----AQAMKAQQLAEGASNQ----AMNAQEGFERLKQR--YTELK- 1089

  Fly  1507 FKLEESSTKDDNLVDDAKRKVGQAKADTQ----EAQKQIEKANADLTAIKD-ELENLKD-----I 1561
            .:|.:||     ::.:...::...||:.:    |..:.::|       :|| |.|.|:.     :
  Rat  1090 DRLGQSS-----MLGEQGNRILSIKAEAEELFGETMEMMDK-------MKDMESELLRGSQAIML 1142

  Fly  1562 NTGDLDRLENRLATVEGEINRVNLTGRIEKY 1592
            .:.||..||.|:..:...||     ||:..|
  Rat  1143 RSADLSGLEKRVEQIRSYIN-----GRVLYY 1168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_001287009.1 LamNT 61..296 CDD:214532 50/251 (20%)
EGF_Lam 298..347 CDD:238012 26/54 (48%)
Laminin_EGF 359..414 CDD:278482 21/62 (34%)
EGF_Lam 414..458 CDD:214543 10/43 (23%)
Laminin_EGF 461..511 CDD:278482 16/49 (33%)
LamB 572..697 CDD:214597 3/124 (2%)
TNFRSF <721..848 CDD:304602 0/126 (0%)
CRD2 724..771 CDD:276900 0/46 (0%)
EGF_Lam 743..791 CDD:238012 0/47 (0%)
Laminin_EGF 847..897 CDD:278482 0/49 (0%)
Laminin_EGF 902..953 CDD:278482 18/50 (36%)
Laminin_EGF 956..1004 CDD:278482 20/52 (38%)
Laminin_EGF 1004..1050 CDD:278482 18/46 (39%)
V_Alix_like 1122..1443 CDD:187408 80/430 (19%)
Tar 1139..1521 CDD:223910 98/481 (20%)
BAR 1308..1469 CDD:299863 44/205 (21%)
vATP-synt_E 1474..>1629 CDD:304907 30/129 (23%)
Lamb3NP_001094311.1 Laminin_N 21..249 CDD:295486 55/277 (20%)
EGF_Lam 250..305 CDD:238012 26/54 (48%)
Laminin_EGF 317..367 CDD:278482 18/49 (37%)
Laminin_EGF 380..429 CDD:278482 26/96 (27%)
EGF_Lam 431..480 CDD:238012 25/440 (6%)
Laminin_EGF 482..535 CDD:278482 20/52 (38%)
EGF_Lam 535..572 CDD:214543 15/36 (42%)
SPEC 909..1092 CDD:295325 45/203 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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