DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and Ntn4

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_001100250.1 Gene:Ntn4 / 299737 RGDID:1565947 Length:630 Species:Rattus norvegicus


Alignment Length:541 Identity:175/541 - (32%)
Similarity:245/541 - (45%) Gaps:97/541 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 STARLLLIGVLFASCSTAILGAQRPPINSAGGHELRGTTFMPALECYDPYGRPQKCLPEFINAAY 76
            |.|||||:.    .||....|     .|...|...|         |      .:.|.|...|.|.
  Rat     3 SCARLLLLW----GCSAVAAG-----FNGVSGVNSR---------C------EKACNPRMGNLAL 43

  Fly    77 QLQIESTNTCGEQNDNHFCIQTMNQN----HKNCEFC----KYNDHNPSFLTDLHDPQSPTWWQS 133
            ..::::..|||:.....||..:.|.:    ...|:.|    .:..|.||.:.|.......|||||
  Rat    44 GRKLQADTTCGQNATELFCFYSENADLTCRQPKCDKCNGAHSHLAHPPSAMADSSFRFPRTWWQS 108

  Fly   134 --ETMFEGIQHPNYVNLTLHLGKSYDITYVRILFRSPRPESFTIYKRTSESGPWIPYQFYSATCR 196
              :...|.||        |.|...:..|::.::|:||||.:..:.:.......|.||::::..|.
  Rat   109 AEDVHREKIQ--------LDLEAEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWKPYKYFATNCS 165

  Fly   197 DTYSLPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINFERSGELQEWVTATD 261
            .|:.|.|. .::||     |:|||.||:..|...||:.|..| ..|..|....|.::||.:..|:
  Rat   166 ATFGLEDD-VVKKG-----AICTSRYSNPFPCTGGEVIFRAL-SPPYDIENPYSAKVQEQLKITN 223

  Fly   262 IRITLDRLNTFGDELFGDSQVLKSYF--YAISDIAVGARCKCNGHASKCVPSTG----------- 313
            :|:.|.:..:...:. .|......:|  |||.|..|...|.|||||.:|:|..|           
  Rat   224 LRVRLLKRQSCPCQR-NDLNAKPHHFTHYAIYDFIVKGSCFCNGHADQCLPVEGFRPVKAPGAFH 287

  Fly   314 -MHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRS--TSTEVNECKACNCNGLADKCFFDANLF 375
             :||:    |.|:|||.|..|..|.|||||..|:.:  .:...|||:.|.|||.||.|.||.|::
  Rat   288 VVHGK----CMCKHNTAGSHCQHCAPLYNDRPWEAADGRTGAPNECRTCKCNGHADTCHFDINVW 348

  Fly   376 NRTGH--GGHCLDCRENRDGPNCERCKENFYMRD-------DGYCVNCACDPVGSRSLQ------ 425
            ..:|:  ||.|.:|:.|.:|.:|:|||..|| ||       ...|..|:|.||||..|.      
  Rat   349 EASGNRSGGVCNNCQHNTEGQHCQRCKPGFY-RDLRRPFSAPDACKACSCHPVGSAILPFSSVTF 412

  Fly   426 CN-SHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDSGGSHQNTPACDTETGICFCKENVE 489
            |: |:|.|.|||||.|..||||...|:.||.:||:.|.|  .||      ||..||.|. ..|.:
  Rat   413 CDPSNGDCPCKPGVAGPHCDRCMVGYWGFGDYGCRPCDC--AGS------CDPLTGDCI-SSNAD 468

  Fly   490 GRRCNECKPGFFNLDKNNRFG 510
            ....:|. |.|.:|...:..|
  Rat   469 VDWYHEV-PAFHSLHNKSEPG 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532 66/246 (27%)
EGF_Lam 298..347 CDD:238012 25/60 (42%)
Laminin_EGF 359..414 CDD:395007 26/63 (41%)
EGF_Lam 414..458 CDD:214543 24/50 (48%)
Laminin_EGF 461..511 CDD:395007 15/50 (30%)
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012
EGF_Lam 793..836 CDD:214543
Laminin_EGF 847..897 CDD:395007
Laminin_EGF 902..953 CDD:395007
EGF_Lam 956..1001 CDD:214543
Laminin_EGF 1004..1046 CDD:395007
SMC_prok_B <1054..1621 CDD:274008
Ntn4NP_001100250.1 Laminin_N 34..260 CDD:459653 67/241 (28%)
EGF_Lam 261..320 CDD:238012 25/62 (40%)
Laminin_EGF 332..392 CDD:395007 25/60 (42%)
EGF_Lam 395..446 CDD:214543 24/50 (48%)
NTR_netrin-4_like 517..626 CDD:239633
Blue background indicates that the domain is not in the aligned region.

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