DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and Ntn1

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:NP_446183.2 Gene:Ntn1 / 114523 RGDID:619809 Length:604 Species:Rattus norvegicus


Alignment Length:469 Identity:202/469 - (43%)
Similarity:276/469 - (58%) Gaps:43/469 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKRSRWSHSGSSTARLLLIGVLFASCSTAILGAQRPPINSAGGHELRGTTFMPALECYDPYGRPQ 65
            |.|:.|....:..|...|:|        |:.|.  |.::...|...:..      .|.|..|.|:
  Rat     1 MMRAVWEALAALAAVACLVG--------AVRGG--PGLSMFAGQAAQPD------PCSDENGHPR 49

  Fly    66 KCLPEFINAAYQLQIESTNTCGEQNDNHFCI--QTMNQNHKNCEFCKYND----HNPSFLTDLHD 124
            :|:|:|:|||:...:..::||| :....:|:  :...:..::|..|..:|    |.|:|||||::
  Rat    50 RCIPDFVNAAFGKDVRVSSTCG-RPPARYCVVSERGEERLRSCHLCNSSDPKKAHPPAFLTDLNN 113

  Fly   125 PQSPTWWQSETMFEGIQHPNYVNLTLHLGKSYDITYVRILFRSPRPESFTIYKRTSESGPWIPYQ 189
            |.:.|.||||..   :|.|:.|.|||.|||.:::|||.:.|.||||||..|||.......|:|:|
  Rat   114 PHNLTCWQSENY---LQFPHNVTLTLSLGKKFEVTYVSLQFCSPRPESMAIYKSMDYGRTWVPFQ 175

  Fly   190 FYSATCRDTYSLPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINFERSGELQ 254
            |||..||..|:.|....|.| :.|..|:||..::|:.||..|.||||||:||||..:|:.|..||
  Rat   176 FYSTQCRKMYNRPHRAPITK-QNEQEAVCTDSHTDMRPLSGGLIAFSTLDGRPSAHDFDNSPVLQ 239

  Fly   255 EWVTATDIRITLDRLNTFGDELFGDSQVLK-SYFYAISDIAVGARCKCNGHASKCVPSTGMHGER 318
            :||||||||:...||:|||||...||::.: ||:||:||:.||.||||||||::||...    :.
  Rat   240 DWVTATDIRVAFSRLHTFGDENEDDSELARDSYYYAVSDLQVGGRCKCNGHAARCVRDR----DD 300

  Fly   319 TLVCECRHNTDGPDCDRCLPLYNDLKWKRSTSTEVNECKACNCNGLADKCFFDANLFNRTGH--G 381
            :|||:|||||.||:||||.|.:.|..|:|:|:.|.|||.|||||..|.:|.|:..|:..:|.  |
  Rat   301 SLVCDCRHNTAGPECDRCKPFHYDRPWQRATAREANECVACNCNLHARRCRFNMELYKLSGRKSG 365

  Fly   382 GHCLDCRENRDGPNCERCKENFYMRDDG-------YCVNCACDPVGSRSLQCN-SHGKCQCKPGV 438
            |.||:||.|..|.:|..|||.|| ||.|       .|..|.|.|||:....|| :.|:|.||.||
  Rat   366 GVCLNCRHNTAGRHCHYCKEGFY-RDMGKPITHRKACKACDCHPVGAAGKTCNQTTGQCPCKDGV 429

  Fly   439 TGDKCDRCDNNYYQ 452
            ||..|:||...|.|
  Rat   430 TGITCNRCAKGYQQ 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532 107/241 (44%)
EGF_Lam 298..347 CDD:238012 27/48 (56%)
Laminin_EGF 359..414 CDD:395007 27/63 (43%)
EGF_Lam 414..458 CDD:214543 20/40 (50%)
Laminin_EGF 461..511 CDD:395007
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012
EGF_Lam 793..836 CDD:214543
Laminin_EGF 847..897 CDD:395007
Laminin_EGF 902..953 CDD:395007
EGF_Lam 956..1001 CDD:214543
Laminin_EGF 1004..1046 CDD:395007
SMC_prok_B <1054..1621 CDD:274008
Ntn1NP_446183.2 LamNT 46..283 CDD:214532 108/241 (45%)
EGF_Lam 284..329 CDD:238012 27/48 (56%)
Laminin_EGF 341..401 CDD:395007 26/60 (43%)
Laminin_EGF 404..>441 CDD:395007 18/36 (50%)
NTR_netrin-1_like 487..601 CDD:239634
Cell attachment site. /evidence=ECO:0000255 530..532
Blue background indicates that the domain is not in the aligned region.

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