DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanB2 and LOC100494394

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:XP_002938270.2 Gene:LOC100494394 / 100494394 XenbaseID:XB-GENE-29082163 Length:643 Species:Xenopus tropicalis


Alignment Length:488 Identity:157/488 - (32%)
Similarity:221/488 - (45%) Gaps:73/488 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 ELRGTTFMPALE--CYDPYG-----------RPQKCLPEFINAAYQLQIESTNTCGEQNDNHFCI 96
            |.:|..|:..|:  .|.|.|           ....|.|..:|.|......:.:|||:.....||.
 Frog     2 EQQGLAFIVFLKWLLYVPPGADSATLYPLRCEGHSCNPPVVNLAAGRTPLTLSTCGKNITETFCS 66

  Fly    97 ---QTMNQ------NHKNCEFCKY----NDHNPSFLTDLHDPQSPTWWQSETMFEGIQHPNYVNL 148
               |..::      ....|:.|..    |.|.||::||....:..||||||   :|||..   .:
 Frog    67 YPEQPPSEQVPSYCGQPKCDKCSVNQLKNSHPPSYMTDDVFSKPATWWQSE---QGIQRE---EI 125

  Fly   149 TLHLGKSYDITYVRILFRSPRPESFTIYKRTSESGP-WIPYQFYSATCRDTYSLPDSRAIRKGEG 212
            .|..|....:|:|.::|:||||.:. |.:|:.::|. |.||::::..|..|:.|.|..|      
 Frog   126 RLDFGTVVYLTHVIMVFKSPRPAAM-ILERSHDNGKNWRPYKYFATNCTATFGLQDDLA------ 183

  Fly   213 EAHALCTSEYSDISPLRDGEIAFSTLEGRPSG-INFERSGELQEWVTATDIRITLDRLNTFGDEL 276
            |...||||.||...|...||:.|..|  .|:. |....|.:.|:.:..|::|:.|.:........
 Frog   184 EEGTLCTSRYSSAWPCTRGEVIFRAL--TPANRIEDPYSPQAQDLLKITNLRLLLLKRQECPCLA 246

  Fly   277 FGDSQVLKSYF--YAISDIAVGARCKCNGHASKCVPSTGMHGERTLV---CECRHNTDGPDCDRC 336
            ..:|:....:|  |||.|:.|...|.|||||..|...|..||.:|:|   |.|:|||.|..|:||
 Frog   247 VPESREKPHWFAHYAIYDLIVRGSCFCNGHAEHCQQVTHTHGAQTVVHGKCVCQHNTAGDHCERC 311

  Fly   337 LPLYNDLKWK--RSTSTEVNECKACNCNGLADKCFFDANLFNRTGH--GGHCLDCRENRDGPNCE 397
            .|||||..|:  ...:...||||.|.|:..|..|.||.:::..:|.  ||.|.:|:.:.:|..|:
 Frog   312 APLYNDQPWRPGDGKTGAPNECKRCRCHNHAHSCHFDLSVWLSSGRTSGGVCENCQHHTEGDRCQ 376

  Fly   398 RCKENFY------MRDDGYCVNCACDPVGSRSLQCNSHGKCQ-------CKPGVTGDKCDRCDNN 449
            ||:..:|      |.....|..|.|...||.....|...||.       |||||.|..||.|...
 Frog   377 RCQPGYYRDPKEPMASPAACKECFCHSTGSAPFALNGSWKCHPRTGFCYCKPGVAGPYCDACRRG 441

  Fly   450 YYQFGPHGCQQCGCDSGGSHQNTPACDTETGIC 482
            ::.|...||:.|.|   .||     ||..||.|
 Frog   442 FWGFSERGCRPCDC---ASH-----CDPHTGKC 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532 73/262 (28%)
EGF_Lam 298..347 CDD:238012 27/53 (51%)
Laminin_EGF 359..414 CDD:395007 18/62 (29%)
EGF_Lam 414..458 CDD:214543 17/50 (34%)
Laminin_EGF 461..511 CDD:395007 9/22 (41%)
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012
EGF_Lam 793..836 CDD:214543
Laminin_EGF 847..897 CDD:395007
Laminin_EGF 902..953 CDD:395007
EGF_Lam 956..1001 CDD:214543
Laminin_EGF 1004..1046 CDD:395007
SMC_prok_B <1054..1621 CDD:274008
LOC100494394XP_002938270.2 Laminin_N 37..269 CDD:459653 73/246 (30%)
EGF_Lam 270..324 CDD:238012 27/53 (51%)
EGF_Lam 335..389 CDD:238012 16/53 (30%)
EGF_Lam 399..450 CDD:214543 17/50 (34%)
NTR_like 529..636 CDD:470599
Blue background indicates that the domain is not in the aligned region.

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