DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanB2 and ntn4

DIOPT Version :10

Sequence 1:NP_524006.1 Gene:LanB2 / 39118 FlyBaseID:FBgn0267348 Length:1639 Species:Drosophila melanogaster
Sequence 2:XP_031754773.1 Gene:ntn4 / 100379839 XenbaseID:XB-GENE-5823493 Length:636 Species:Xenopus tropicalis


Alignment Length:467 Identity:156/467 - (33%)
Similarity:218/467 - (46%) Gaps:69/467 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 CLPEFINAAYQLQIESTNTCGEQNDNHFCI------QTMNQNHKNCEFCKYN----DHNPSFLTD 121
            |.|...|.|....:.:..|||..|....|.      ||..:  ..|:.|...    .|.||.:.|
 Frog    43 CNPRMGNLAIGRSLWTETTCGHNNTELSCTYQGYIEQTCTE--PKCDKCNAALPRLSHPPSAMAD 105

  Fly   122 LHDPQSPTWWQSETMFEGIQHPNYVNLTLHLGKSYDITYVRILFRSPRPESFTIYKRTSESG-PW 185
            .......|||||....    |...:.|.|.  ..:..|::.::|:||||.:. |.:|:.:.| .|
 Frog   106 SSFKIPRTWWQSAKDI----HREVIRLDLE--TEFYFTHLIMVFKSPRPAAM-ILERSQDFGVTW 163

  Fly   186 IPYQFYSATCRDTYSLPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINFERS 250
            :||:::|..|..|:::.|...      |..|||||.||...|...||:.:.|: ..|.......|
 Frog   164 MPYKYFSINCSATFAMEDDIQ------EKGALCTSRYSHAFPCTGGEVIYRTM-SPPYSAQDPYS 221

  Fly   251 GELQEWVTATDIRITLDRLNTFGDELFGDSQVLKSYF--YAISDIAVGARCKCNGHASKCVPSTG 313
            .|.|:.:..|::|:.|.:......: ..:|.:...||  ||:.|..|...|.|||||..||.:.|
 Frog   222 KEAQDQLKITNLRVQLLKQQACPCQ-EKNSDIKPQYFTHYAVYDFIVKGSCFCNGHADHCVAADG 285

  Fly   314 MHGERTLV--------CECRHNTDGPDCDRCLPLYNDLKWKRST--STEVNECKACNCNGLADKC 368
            ....||..        |.|:|||.||.|:.|.|||||..|:.:.  :.|.|.||.|.|||.||.|
 Frog   286 FRQVRTTSKIQVVHGRCICKHNTAGPHCEHCAPLYNDQLWEAANGKTGEANTCKKCKCNGHADSC 350

  Fly   369 FFDANLF----NRTGHGGHCLDCRENRDGPNCERCKENFYMRD-------DGYCVNCACDPVGSR 422
            .||.:::    |||  ||.|.:|:.|.:|..|:|||..|: ||       ...|..|:|.|:||.
 Frog   351 HFDMDVWLGSGNRT--GGVCDNCQHNTEGSQCQRCKPGFF-RDLKMPFSAPDACKACSCHPIGSA 412

  Fly   423 SLQ------CN-SHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDSGGSHQNTPACDTETG 480
            .|.      |: ::|.|.|||||.|..||:|...|:.||.:||:.|.|  .||      ||..||
 Frog   413 VLPFGNITLCDPTNGDCPCKPGVAGPHCDQCMVGYWGFGEYGCRPCDC--AGS------CDPFTG 469

  Fly   481 ICFCKENVEGRR 492
            .|....:::..|
 Frog   470 DCITNLDIDWYR 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanB2NP_524006.1 LamNT 61..296 CDD:214532 66/241 (27%)
EGF_Lam 298..347 CDD:238012 26/56 (46%)
Laminin_EGF 359..414 CDD:395007 26/65 (40%)
EGF_Lam 414..458 CDD:214543 21/50 (42%)
Laminin_EGF 461..511 CDD:395007 10/32 (31%)
LamB 572..697 CDD:214597
EGF_Lam 743..791 CDD:238012
EGF_Lam 793..836 CDD:214543
Laminin_EGF 847..897 CDD:395007
Laminin_EGF 902..953 CDD:395007
EGF_Lam 956..1001 CDD:214543
Laminin_EGF 1004..1046 CDD:395007
SMC_prok_B <1054..1621 CDD:274008
ntn4XP_031754773.1 Laminin_N 43..269 CDD:459653 67/242 (28%)
EGF_Lam 270..322 CDD:238012 23/51 (45%)
Laminin_EGF 341..394 CDD:395007 25/55 (45%)
EGF_Lam 404..455 CDD:214543 21/50 (42%)
NTR_netrin-4_like 526..634 CDD:239633
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.