DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3088 and Ctrb1

DIOPT Version :9

Sequence 1:NP_648334.1 Gene:CG3088 / 39115 FlyBaseID:FBgn0036015 Length:252 Species:Drosophila melanogaster
Sequence 2:NP_036668.1 Gene:Ctrb1 / 24291 RGDID:2444 Length:263 Species:Rattus norvegicus


Alignment Length:249 Identity:64/249 - (25%)
Similarity:111/249 - (44%) Gaps:55/249 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ITNGSPAYEGQAPYVVGMAFGQSNIWCSGTIIGDTWILTSAQCLTGSSGVTIYFGATRLSQAQFT 93
            |.||..|..|..|:.|.:.......:|.|::|.:.|::|:|.|...:|.|               
  Rat    34 IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCGVKTSDV--------------- 83

  Fly    94 VTVGTSEYVTGNQHLALVRVPRV------------------------GFSNRVNRVALPSLRNRS 134
            |..|..:..:..:::.::::.:|                        .||..|:.|.||::.:..
  Rat    84 VVAGEFDQGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDF 148

  Fly   135 QRYENWWANVC---GWGVTTFSNGL--TDALQCVDLQIMSNNECIAFYGSTTVSDQILCTRTPSG 194
            ..     ..||   |||.|.: |.|  .:.||...|.|:|..:|...:|| .::|.:.|... ||
  Rat   149 PP-----GTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCKKSWGS-KITDVMTCAGA-SG 205

  Fly   195 RSTCFGDAGSPLITKQDS--TVVGISAFVASNGCTLGLPAGFARITSALDWIHQ 246
            .|:|.||:|.||:.::|.  |:.||.:: .|..|:...||.::|:|:.:.|:.|
  Rat   206 VSSCMGDSGGPLVCQKDGVWTLAGIVSW-GSGVCSTSTPAVYSRVTALMPWVQQ 258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3088NP_648334.1 Tryp_SPc 29..246 CDD:238113 63/247 (26%)
Tryp_SPc 29..244 CDD:214473 62/245 (25%)
Ctrb1NP_036668.1 Tryp_SPc 33..256 CDD:214473 62/245 (25%)
Tryp_SPc 34..259 CDD:238113 64/249 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1522379at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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