DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42673 and Ldlrap1

DIOPT Version :10

Sequence 1:NP_729510.1 Gene:CG42673 / 39111 FlyBaseID:FBgn0261555 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_001102741.1 Gene:Ldlrap1 / 500564 RGDID:1563417 Length:307 Species:Rattus norvegicus


Alignment Length:316 Identity:54/316 - (17%)
Similarity:108/316 - (34%) Gaps:118/316 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 GSIMLERPKTDKPRKKLSFREPIIAGDQI----LPLILSEQRQARQRRRSSPLERSRVGLAIAD- 329
            |..::||||                |:::    :..|::..:.:.::.:...|:.|..|:.:.| 
  Rat    53 GMTLVERPK----------------GEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDS 101

  Fly   330 -----CDN---------------------LCNNRTKDAISCGCATSDPESQAMRIVRTVGQAFEV 368
                 .:|                     :..::..:::.|..........|..:..||.|||:|
  Rat   102 LTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQAFKV 166

  Fly   369 CHKFNLHKNSLEPNDERSDISSSELLDVEQIS--EQQLSEDGERGGGDNETPKKEHLAITPDLNH 431
            ..:|                        .|:|  |::..|...:.|||....:::.   ||.|. 
  Rat   167 AFEF------------------------WQVSKEEKEKREKANQEGGDVPGTRRDS---TPSLK- 203

  Fly   432 TQPQRPNHLDIMPSHSSLRKSNSLLCDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLM 496
                           :|:...|  |.|:::.:....|:..:....:.|.|..|.|.....:.:| 
  Rat   204 ---------------TSVATGN--LLDLEELAKAPLSTVSANTKNMDDALRPQVLGNNSVVWEL- 250

  Fly   497 LVREQLISETNARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIGMA 552
               :..:.|..:|: ||:||      |.::|:             .|||:.:|..|
  Rat   251 ---DDGLDEAFSRL-AQSRT------NPQVLD-------------TGLTAQDIHYA 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42673NP_729510.1 PH-like <352..386 CDD:473070 8/33 (24%)
Ldlrap1NP_001102741.1 PTB_LDLRAP-mammal-like 43..165 CDD:269981 18/127 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..205 7/44 (16%)
Clathrin box. /evidence=ECO:0000250|UniProtKB:Q5SW96 211..215 2/3 (67%)
AP-2 complex binding. /evidence=ECO:0000250|UniProtKB:Q5SW96 248..275 9/50 (18%)
[DE]-X(1,2)-F-X-X-[FL]-X-X-X-R motif. /evidence=ECO:0000250|UniProtKB:Q5SW96 256..265 4/9 (44%)

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