DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42673 and Ldlrap1

DIOPT Version :10

Sequence 1:NP_729510.1 Gene:CG42673 / 39111 FlyBaseID:FBgn0261555 Length:904 Species:Drosophila melanogaster
Sequence 2:NP_663529.2 Gene:Ldlrap1 / 100017 MGIID:2140175 Length:308 Species:Mus musculus


Alignment Length:277 Identity:47/277 - (16%)
Similarity:95/277 - (34%) Gaps:97/277 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 GSIMLERPKTDKPRKKLSFREPIIAGDQI----LPLILSEQRQARQRRRSSPLERSRVGLAIAD- 329
            |..::||||                |:::    :..|::..:.:.::.:...|:.|..|:.:.| 
Mouse    53 GMTLVERPK----------------GEELSAAAVKRIVATAKASGKKLQKVTLKVSPRGIILTDS 101

  Fly   330 -----CDN---------------------LCNNRTKDAISCGCATSDPESQAMRIVRTVGQAFEV 368
                 .:|                     :..::..:::.|..........|..:..||.|||:|
Mouse   102 LTSQLIENVSIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCTKRKVAQAVTLTVAQAFKV 166

  Fly   369 CHKF-NLHKNSLE----PNDERSD---------------ISSSELLDVEQISEQQLSEDGERGGG 413
            ..:| .:.|...|    .|.|..|               :::..|||:|::::..||........
Mouse   167 AFEFWQVSKEEKEKREKANQEGGDVPGTRRDSTPSLKTLVATGNLLDLEEVAKAPLSTVSANTNN 231

  Fly   414 DNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLRKSNSLLCDVD---DKSPGSPSSPRSEIT 475
            .:|||:.:.|.                           :||::.::|   |::....:..|:...
Mouse   232 VDETPRPQVLG---------------------------NNSVVWELDDGLDEAFSRLAQSRTNPQ 269

  Fly   476 QLKDQLEAQALQTRQAL 492
            .|...|.||.:...|.|
Mouse   270 VLDTGLSAQDIHYAQCL 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42673NP_729510.1 PH-like <352..386 CDD:473070 12/38 (32%)
Ldlrap1NP_663529.2 PTB_LDLRAP-mammal-like 43..165 CDD:269981 18/127 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..201 4/21 (19%)
Clathrin box. /evidence=ECO:0000250|UniProtKB:Q5SW96 211..215 3/3 (100%)
AP-2 complex binding. /evidence=ECO:0000250|UniProtKB:Q5SW96 248..275 4/26 (15%)
[DE]-X(1,2)-F-X-X-[FL]-X-X-X-R motif. /evidence=ECO:0000250|UniProtKB:Q5SW96 256..265 0/8 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 288..308
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.