DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3408 and lrrc59

DIOPT Version :9

Sequence 1:NP_648328.1 Gene:CG3408 / 39107 FlyBaseID:FBgn0036008 Length:331 Species:Drosophila melanogaster
Sequence 2:NP_001001205.1 Gene:lrrc59 / 407863 XenbaseID:XB-GENE-963187 Length:308 Species:Xenopus tropicalis


Alignment Length:237 Identity:85/237 - (35%)
Similarity:127/237 - (53%) Gaps:46/237 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 NVKERVVDETCDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI 77
            |:::::.....|||||:|||:|||::.:..:.|.||||.|:|.:|..:|..|:.:||||||||||
 Frog    10 NLRDKLDGNELDLSLSDLSEVPVRDLVAIPKATALDLSCNKLTSLPDDFCNLSYIVRLDLSKNQI 74

  Fly    78 KFLPEDFGQLEQLRHLDLYNNCLEHLPISFGQLRRLRYLDLKGNPLTPAWEKIVGCCSTQKDCQQ 142
            ..||.:||:|..|:||||..|.:..||:||.||:.|::||||.|||.||..|:.|.|..:|.|::
 Frog    75 AQLPSEFGRLVNLQHLDLLQNRIVALPVSFAQLKSLKWLDLKDNPLKPALAKVAGDCLDEKQCKE 139

  Fly   143 AAKNTV----SICANYKPEF--------IERERLAAQE--------------SQKMAGAGDSSAN 181
            .|:..:    |:.::::.|.        ..::||.||:              .|:.........|
 Frog   140 CAQGVLQYMKSVQSDHERELQRKLQLDKDRKQRLEAQQRVKEEQDRELRKRMKQQQKERKRRDYN 204

  Fly   182 AVQTNGGAAGGKKSTKPNNKKA--------------KAKKLA 209
            |:|.      .:|:...|.|||              |.||||
 Frog   205 AMQE------AQKALNNNKKKAEEEPSENHKPVPTPKEKKLA 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3408NP_648328.1 LRR_RI <43..>124 CDD:238064 44/80 (55%)
leucine-rich repeat 44..66 CDD:275378 10/21 (48%)
LRR_8 65..123 CDD:290566 33/57 (58%)
leucine-rich repeat 67..89 CDD:275378 15/21 (71%)
leucine-rich repeat 90..112 CDD:275378 12/21 (57%)
leucine-rich repeat 113..124 CDD:275378 7/10 (70%)
lrrc59NP_001001205.1 LRR 1 10..31 9/20 (45%)
LRR <18..>131 CDD:227223 60/112 (54%)
leucine-rich repeat 19..40 CDD:275378 11/20 (55%)
LRR 2 40..61 9/20 (45%)
leucine-rich repeat 41..63 CDD:275378 10/21 (48%)
LRR 3 63..84 14/20 (70%)
leucine-rich repeat 64..86 CDD:275378 15/21 (71%)
LRR 4 86..107 10/20 (50%)
leucine-rich repeat 87..109 CDD:275378 12/21 (57%)
LRR 5 109..128 11/18 (61%)
leucine-rich repeat 110..121 CDD:275378 7/10 (70%)
PRK00409 <157..236 CDD:234750 14/84 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 170..240 16/75 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007322
OrthoInspector 1 1.000 - - oto102684
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4209
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.940

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