DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and AVT2

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_010850.1 Gene:AVT2 / 856645 SGDID:S000000790 Length:480 Species:Saccharomyces cerevisiae


Alignment Length:479 Identity:99/479 - (20%)
Similarity:181/479 - (37%) Gaps:103/479 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IQPRKSDTEQALAGNDFDPFALRDNPHPTTDNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFS 94
            |.|...||    ..||    .||:|...::......:|..:.||.||:..|||...:|::.|:.|
Yeast    47 ITPDMDDT----LVND----VLRENDKKSSMRMAFMNLANSILGAGIITQPFAIKNAGILGGLLS 103

  Fly    95 TIFTAFICTHCSYVLV----KCGHKLYYRTRRTKMTFAEIAEAAFQKGPKWCRGFAPVAKFSILF 155
            .:...||......::|    ..|.:.|..|         :.....:||           |..|||
Yeast   104 YVALGFIVDWTLRLIVINLTLAGKRTYQGT---------VEHVMGKKG-----------KLLILF 148

  Fly   156 --GLFLTYFGTCSVYTVIVASNFEQL-----------ISYWTGTAVSLRMLICIMLVPLIL---I 204
              |||.  ||.|..|.:|:......:           :.:|....|.:.|:...:..||.:   |
Yeast   149 TNGLFA--FGGCIGYCIIIGDTIPHVLRAIFSQNDGNVHFWLRRNVIIVMVTTFISFPLSMKRNI 211

  Fly   205 AWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVWSTLPQFFSITIF-AMEAIG 268
            ..:....:||.:||:..|       :|.......||...:..|:..|..  |...||| ::..|.
Yeast   212 EALSKASFLAVISMIIIV-------LTVVIRGPMLPYDWKGHSLKLSDF--FMKATIFRSLSVIS 267

  Fly   269 VVMPLENNMKTPQSFLGICGVLSQGMSGVT-----------LIYMLLGFLGYLRYGSATGESITL 322
            ..:...:|    .||: ...:.::.::..|           :...|:|:.|:..:...|..::..
Yeast   268 FALVCHHN----TSFI-FFSMRNRSVAKFTRLTHISIIISVICCALMGYSGFAVFKEKTKGNVLN 327

  Fly   323 NLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIWDGIKEKCKKRPTLVNYVLRT-------VL 380
            :.|..:......::.....:..||.::.||..:::.:.:.| |.   .:.||...|       |:
Yeast   328 SFPGTDTAINIARLCFGFNMLTTFPMEIFVLRDVVGNLLHE-CN---LIKNYDEHTQLSGKQHVV 388

  Fly   381 VTAAVV---LAVAVPT--IGPFMGLIGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAI- 439
            :|:::|   :.:::.|  :|....||||...|.:..|.|....|::..:..       .||..: 
Yeast   389 ITSSLVFITMGISLTTCNLGALFELIGATTASTMAYILPPYTNLLLTSKKK-------SWKERLP 446

  Fly   440 --ITLC-GIGALVFGTQAAIKDIV 460
              :.:| |...::..:...|.|.|
Yeast   447 FYLCICFGFMIMIISSTQTIIDAV 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 87/447 (19%)
SdaC 67..445 CDD:223884 86/425 (20%)
AVT2NP_010850.1 Aa_trans 65..467 CDD:279788 87/448 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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