DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and AVT4

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_014298.1 Gene:AVT4 / 855622 SGDID:S000005045 Length:713 Species:Saccharomyces cerevisiae


Alignment Length:489 Identity:118/489 - (24%)
Similarity:207/489 - (42%) Gaps:87/489 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFALRDNPHPTTDNETLTHLLKASLGTGILGMPF 81
            :.|:|....:|.    |..|...||.........|......|:..:....|||:.:|||:|.:|.
Yeast   260 DDFIPDSSNMMI----RGEDERSALLSRPDHMKVLPSAKGTTSTKKVFLILLKSFIGTGVLFLPN 320

  Fly    82 AFMCSGLIMGIFSTIFTAFICTHCSYVLVK----CGHKLYYRTRRTKMTFAEIAEAAFQKGPKWC 142
            ||...||...:....|.......|.|:||:    ||          ..:|.:|....:  || |.
Yeast   321 AFHNGGLFFSVSMLAFFGIYSYWCYYILVQAKSSCG----------VSSFGDIGLKLY--GP-WM 372

  Fly   143 RGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQLIS--YWTGTAVSLRMLICIMLVPLILIA 205
            |       ..|||.|.:|..|....|.:..|.|.:..:.  :..| .:.|..|:....:..|.::
Yeast   373 R-------IIILFSLVITQVGFSGAYMIFTAKNLQAFLDNVFHVG-VLPLSYLMVFQTIIFIPLS 429

  Fly   206 WVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDL-------PPVEERESVVWS------TLPQFF 257
            ::.|:..|:..|::||.|:..||.|...:..:.|       |.:    .||:.      ||  |.
Yeast   430 FIRNISKLSLPSLLANFFIMAGLVIVIIFTAKRLFFDLMGTPAM----GVVYGLNADRWTL--FI 488

  Fly   258 SITIFAMEAIGVVMPLENNMKTPQSF-LGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESIT 321
            ...|||.|.||:::|::::|:.|:.| |    ||:..:...|::::.:..||||.|||.....|.
Yeast   489 GTAIFAFEGIGLIIPVQDSMRNPEKFPL----VLALVILTATILFISIATLGYLAYGSNVQTVIL 549

  Fly   322 LNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEII--------------WDGIKEKCKKRPT-- 370
            ||||........:::..|:|:..:..||.|..::||              .|.:..:.:.||.  
Yeast   550 LNLPQSNIFVNLIQLFYSIAIMLSTPLQLFPAIKIIENKFFPKFTKIYVKHDDLTTRVELRPNSG 614

  Fly   371 --------LVNYVLRTVLVTAAVVLA-VAVPTIGPFMGLIGAFCFSILGLIFPVVIEL----IVH 422
                    |.|:: |:::|...|.:| .....:..|:.:||:.....|..|:|.::.|    :..
Yeast   615 KLNWKIKWLKNFI-RSIIVIIVVSIAYFGSDNLDKFVSVIGSLACIPLVYIYPSMLHLRGNSLPE 678

  Fly   423 WESGFGKYNWILWKNAIITLCGIGALVFGTQAAI 456
            .:..|.::..:|  :.|:...||.::::.:..:|
Yeast   679 TKGEFWRFKPML--DTILIFFGIASMLYTSYQSI 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 109/448 (24%)
SdaC 67..445 CDD:223884 106/426 (25%)
AVT4NP_014298.1 Aa_trans 295..711 CDD:279788 110/450 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 151 1.000 Domainoid score I928
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 153 1.000 Inparanoid score I1099
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000138
OrthoInspector 1 1.000 - - mtm9188
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X121
TreeFam 00.000 Not matched by this tool.
87.860

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