DRSC/TRiP Functional Genomics Resources

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Protein Alignment path and AVT1

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_012534.1 Gene:AVT1 / 853457 SGDID:S000003761 Length:602 Species:Saccharomyces cerevisiae


Alignment Length:485 Identity:104/485 - (21%)
Similarity:187/485 - (38%) Gaps:111/485 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 IQPRKSDTEQALAG-------NDFDPFALR-----DNPHPT------TDNETLTHLLKASLGTGI 76
            ::|..|.||....|       ||.|...::     |....|      |..:|:.:.:...:|.|:
Yeast   162 LRPTASLTEMMSGGAGRRFTNNDMDSIVVKRVEGVDGKVVTLLAGQSTAPQTIFNSINVLIGIGL 226

  Fly    77 LGMPFAFMCSGLIMGIFSTIFTAF-ICTHC-SYVLVKCGHKLYYRTRRTKMTFAEIAEAAFQKGP 139
            |.:|.....:|.::|:  |:...| :.|.| :.:|.:|     ..|..|.:::|::..|||    
Yeast   227 LALPLGLKYAGWVIGL--TMLAIFALATFCTAELLSRC-----LDTDPTLISYADLGYAAF---- 280

  Fly   140 KWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLRMLICIMLVPLILI 204
                |....|..|.||.|.|...|...|  ::...:...|...::.|  ..:::...::.|.:.|
Yeast   281 ----GTKGRALISALFTLDLLGSGVSLV--ILFGDSLNALFPQYSTT--FFKIVSFFIVTPPVFI 337

  Fly   205 AWVPNLKYLAPVSMVANVFM-------GLGLGITFYYLVQDLPP---VEERESVVWSTLPQFFSI 259
                      |:|:::|:.:       |..|.|....|.:...|   |...|:.:|....:...:
Yeast   338 ----------PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPGSLVNPMETSMWPIDLKHLCL 392

  Fly   260 TIFAMEAI---GVVMP-LENNMKTPQSFLGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATGESI 320
            :|..:.|.   ..|.| |:.:|:.|..|.. |...:..::.||.|...:  :|:|.:|:...:.|
Yeast   393 SIGLLSACWGGHAVFPNLKTDMRHPDKFKD-CLKTTYKITSVTDIGTAV--IGFLMFGNLVKDEI 454

  Fly   321 TLNLPIEEWPAQTVKVLIS-------LAVYCTFGLQFFVCLEIIWD---------GIKEKCKKRP 369
            |.|:.:.|...:.|..|||       :|............|:::.:         .||.:..|..
Yeast   455 TKNVLLTEGYPKFVYGLISALMTIIPIAKTPLNARPIVSVLDVLMNVQHIDEAASAIKRRAAKGL 519

  Fly   370 TLVNYVLRTVLVTAAVVLAVAVPTIGPFMGLIGA-FCFSILGLIFPVVIEL------IVHWESGF 427
            .:.|.:...|:.   |::|:..|.....:..:|| .||:|. ||.|....|      |..||.  
Yeast   520 QVFNRIFINVVF---VLIAINFPEFDKIIAFLGAGLCFTIC-LILPCWFYLRLCKTTIKPWER-- 578

  Fly   428 GKYNWILWKNAIITLC--------GIGALV 449
                    ....:|:|        |:||.:
Yeast   579 --------VACHVTICISVVLSTLGVGAAI 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 95/447 (21%)
SdaC 67..445 CDD:223884 89/424 (21%)
AVT1NP_012534.1 Aa_trans 206..601 CDD:279788 94/441 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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