DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and AT5G02180

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001331278.1 Gene:AT5G02180 / 831862 AraportID:AT5G02180 Length:550 Species:Arabidopsis thaliana


Alignment Length:484 Identity:117/484 - (24%)
Similarity:204/484 - (42%) Gaps:86/484 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SKHAPQEMEQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFALRDNPHPTTDNETLTHLLKASLG 73
            |:..|.:.|..||    |..:.|.:.|.|:..|           ..|:..:.::::.:......|
plant   125 SQPVPDKEETILP----VNPQSQLKLSVTDLPL-----------PEPNLCSFSQSVLNGTNVLCG 174

  Fly    74 TGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYRTRRTKMTFAEIAEAAFQKG 138
            .|::.||:|...||. :|:...:|...|..:...::.:|     ..:.....|:.:|.:||    
plant   175 LGLITMPYAIKESGW-LGLPILLFFGVITCYTGVLMKRC-----LESSPGIQTYPDIGQAA---- 229

  Fly   139 PKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQL---ISYWTGTAVSL------RMLI 194
                  |....:|.|...|::..:..|..|.::::.|...|   :|....:.:||      .:|.
plant   230 ------FGITGRFIISILLYVELYAACVEYIIMMSDNLSGLFPNVSLSIASGISLDSPQIFAILT 288

  Fly   195 CIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGL-------GITFYYL--VQDLPPVEERESVVW 250
            .::::|.:.:..:..|.||:...::|::.:|:.|       ||.|:..  |.||           
plant   289 TLLVLPTVWLKDLSLLSYLSVGGVLASILLGICLFWVGAVDGIGFHATGRVFDL----------- 342

  Fly   251 STLPQFFSITIFAMEAIGVVMPLENNMKTPQSF---LGICGVLSQGMSGVTLIYMLLGFLGYLRY 312
            |.||....|..|......|...:.::||.|..|   |.||      .|..|::|:.:...||..:
plant   343 SNLPVTIGIFGFGYSGHSVFPNIYSSMKDPSRFPLVLVIC------FSFCTVLYIAVAVCGYTMF 401

  Fly   313 GSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIWDGIKE---KCKKRPTLVNY 374
            |.|.....|||:|...:|:   ||.:..|| .|...::.:.:..|...::|   ..|.|...|:.
plant   402 GEAVESQFTLNMPKHFFPS---KVAVWTAV-ITPMTKYALTITPIVMSLEELIPTAKMRSRGVSI 462

  Fly   375 VLRTVLVTAAVVLAVAVPTIGPFMGLIGAFCFSILGLIFPVVIELIVHWESGFGKYNWILWKNAI 439
            :.||:|||:.:|:|::||.......|||:|...::.||||.:..|.:.    .||.:     |..
plant   463 LFRTMLVTSTLVVALSVPFFAIVAALIGSFLAMLVALIFPCLCYLSIL----KGKLS-----NTQ 518

  Fly   440 ITLCGIGALVFGTQAAIKDIVKAYSNNEN 468
            |.|| |..:|||..:.......|.|...|
plant   519 IGLC-IFIIVFGVVSGCCGTYSAISRLAN 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 103/423 (24%)
SdaC 67..445 CDD:223884 99/401 (25%)
AT5G02180NP_001331278.1 SLC5-6-like_sbd 160..542 CDD:320982 104/428 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.