DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and LHT7

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_567977.2 Gene:LHT7 / 829671 AraportID:AT4G35180 Length:478 Species:Arabidopsis thaliana


Alignment Length:465 Identity:96/465 - (20%)
Similarity:180/465 - (38%) Gaps:129/465 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GNDFD---------PFALRDNPHPTTDNETLT--------------------------------H 66
            ||.||         |..:  :|.|:||.:.::                                |
plant     6 GNLFDLESQESGGSPLFM--SPAPSTDPQPISGEKNGGDGGRIPVEEWLPITESRKGNVYTATFH 68

  Fly    67 LLKASLGTGILGMPFAFMCSGLIMG-IFSTIFTAFIC-THCSYVLVKCGHKLYYRTRRTKMTFAE 129
            ||.:.:|..::.:|.||...|.:.| |..|:  .|:. .:.:::||:. |:.....|.::  :..
plant    69 LLCSGIGLQVILLPAAFAALGWVWGTIILTV--GFVWKLYTTWLLVQL-HEAVPGIRISR--YVR 128

  Fly   130 IAEAAFQKGPKWCRGFAPVAKFSILFGLFLTYF---GTCSVYTVIVASNFEQLISYW----TGTA 187
            :|.|:|.            .|...|.|:|...:   |.|::..:....:.:||:...    |...
plant   129 LAIASFG------------VKLGKLLGIFPVMYLSGGACTILVITGGKSIQQLLQIMSDDNTAPL 181

  Fly   188 VSLRMLICIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERE----SV 248
            .|::..:....:.:|: :..|||..|..||::     |..:||.:..::..||...:.:    ||
plant   182 TSVQCFLVFSCIAMIM-SQFPNLNSLFGVSLI-----GAFMGIAYCTVIWILPVASDSQRTQVSV 240

  Fly   249 VWSTLPQFFSITIFAMEAIGVVM--------------PLENNMKTPQSFLGICGVLSQGM----S 295
            .::|:.:.| :.||  .|||::.              .|.::.|.|.     |..:.:.:    :
plant   241 SYATMDKSF-VHIF--NAIGLIALVYRGNNLVLEIQGTLPSDSKNPS-----CKTMWRAVMISHA 297

  Fly   296 GVTLIYMLLGFLGYLRYGS---ATGESI--TLNLPIEEWPAQT---VKVLISLAVYCTFGLQFF- 351
            .|.:....|.|..|..||.   |||..:  .|.|..:|...:.   :.:....:..|::.:... 
plant   298 LVAICMFPLTFAVYWAYGDKIPATGGPVGNYLKLYTQEHSKRAACFIHLTFIFSCLCSYPINLMP 362

  Fly   352 VC--LEIIWDGIKEKCKKRPTLVNYVLRTVLVTAAVVLAVAVPTIGPFMG-LIGAF--------- 404
            .|  :|:::  |.:|.|....:|..:||..|......:||..|.: |::. ||||.         
plant   363 ACDNIEMVY--ITKKKKPASIIVRMMLRVFLSLVCFTIAVGFPFL-PYLAVLIGAIALLVTFTYP 424

  Fly   405 CFSILGLIFP 414
            ||..:.:..|
plant   425 CFMWISIKKP 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 90/443 (20%)
SdaC 67..445 CDD:223884 86/400 (22%)
LHT7NP_567977.2 SLC5-6-like_sbd 58..462 CDD:294310 87/411 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D464614at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.