DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and slc-36.1

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_499743.2 Gene:slc-36.1 / 259544 WormBaseID:WBGene00012804 Length:455 Species:Caenorhabditis elegans


Alignment Length:479 Identity:146/479 - (30%)
Similarity:237/479 - (49%) Gaps:39/479 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVNIVDSGSKHAPQEMEQFLPGEGKVMYKIQPRKSDTEQALAGNDFDPFALRDNPHPT----TDN 61
            |.|....|.:....|.|  .||:.:|.   .||::...:       |....:|. .||    |..
 Worm     1 MANPARDGYQEFDNEPE--APGDTEVQ---TPRRNTVSE-------DTSLFQDR-LPTENSLTPE 52

  Fly    62 ETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYRTRRTKMT 126
            :...|::||.||||:|.:|.||..|||.:|:..|:....||.:|...:|...|.:..|..|..:.
 Worm    53 QAFIHMVKAMLGTGLLSLPLAFKHSGLFLGLILTVLICLICLYCMRQVVFAAHFVCNRNGRDLID 117

  Fly   127 FAEIAEAAFQKGPKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTAVSLR 191
            :|.|...|.:.||.|.:......|..:...:|::..|.|.||.|.:|.|.|...:..|...:|..
 Worm   118 YANIMRGAVEMGPPWIKRNGYFFKQLVNVNMFISQLGFCCVYFVFMADNLEDFFNNNTSIHLSKA 182

  Fly   192 MLICIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVW----ST 252
            :.:.::|:|::.|..:..|..|||.:|.|||...:.:.:..::.:.||.|:   .|:.|    :.
 Worm   183 VWMLLLLIPMLSICSIRRLSILAPFAMAANVVYVVAVAVVLFFFLSDLRPI---SSLPWFGKATD 244

  Fly   253 LPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLIYMLLGFLGYLRYGSATG 317
            ||.||...:||.|.:.|:||:||.|::|.:|:...|||:.....|..|:.:.||.|||..|:...
 Worm   245 LPLFFGTVMFAFEGVAVIMPIENRMQSPHAFISWNGVLNSSCLVVLAIFSVTGFYGYLSLGNDVK 309

  Fly   318 ESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIWDGIKEKCK-KRPTLVNYVLR--TV 379
            ::.|||||:..: .||:|::....:..::.|||:|.:|.|...|..|.. .:.||..|:.|  .|
 Worm   310 DTATLNLPMTPF-YQTIKLMFVACIMISYPLQFYVPMERIEKWITRKIPVDKQTLYIYIARYSGV 373

  Fly   380 LVTAAVVLAVAVPTIGPFMGLIGAFCFSILGLIFPVVIELIVHW---ESGFGKYNWILW-KNAII 440
            ::|.|:  |..:|.:..|:.|||||..:.:.|:||..|||:..:   |...|     || ||.::
 Worm   374 ILTCAI--AELIPHLALFISLIGAFSGASMALLFPPCIELLTSYAKNELSTG-----LWIKNIVL 431

  Fly   441 TLCGIGALVFGTQAAIKDIVKAYS 464
            ..........||.:|:.:|.|.::
 Worm   432 LTFAFIGFTTGTYSALIEIAKTFA 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 131/414 (32%)
SdaC 67..445 CDD:223884 125/388 (32%)
slc-36.1NP_499743.2 SLC5-6-like_sbd 50..445 CDD:382020 129/405 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 277 1.000 Domainoid score I909
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 282 1.000 Inparanoid score I1740
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoDB 1 1.010 - - D284074at33208
OrthoFinder 1 1.000 - - FOG0000138
OrthoInspector 1 1.000 - - mtm4749
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X121
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.980

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