DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and avt5

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_595211.1 Gene:avt5 / 2540081 PomBaseID:SPBC1685.07c Length:420 Species:Schizosaccharomyces pombe


Alignment Length:370 Identity:84/370 - (22%)
Similarity:156/370 - (42%) Gaps:44/370 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 TLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYRTRRTKMTF 127
            ::.:|....||.|||.:|.||..:||:.|..:.:|:||......|.:.:|..:|    .|.|.:|
pombe    24 SVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCAARL----PRGKASF 84

  Fly   128 AEIAEAAFQKGPKWCRGFAPVAKFSILF--GLFLTYFGTCSVYTVIVASNFEQLI-SYWTGTAVS 189
            |.:|:..|             ...:::|  .:.:..||....|.|||.....|:. |....:.:.
pombe    85 AAVAKHTF-------------PSLAVVFDASIAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMF 136

  Fly   190 LR-----MLICIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESV- 248
            ||     :....:|.||..:..:.:|::.:.:|::|..:  |...:.:::::.|....|.|..| 
pombe   137 LRRQTWIVFALFVLTPLSFLKRLDSLRHTSVISLIALCY--LVFIVLYHFIIGDTVKGEIRYFVP 199

  Fly   249 -----VWSTLPQF-FSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLIYMLLGFL 307
                 ..|.||.| |..|.. ..|..|:..:.|..:...:|.....::|.     ||:|:|:...
pombe   200 ESGFGYLSVLPVFVFGFTCH-QNAFSVINEVRNFSQGFVNFTMFTAIISS-----TLLYLLVAIT 258

  Fly   308 GYLRYGS-ATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIWDGIKEKCKKRPTL 371
            |||.:|| |:|..|.:......|.... |:.|.:.|..::.||...|...::..|:.........
pombe   259 GYLSFGSLASGNIIAMYDNTSIWIIGG-KLAIVVLVLFSYPLQCHPCRNSVYQAIRRSYSAHDMS 322

  Fly   372 VNY--VLRTVLVTAAVVLAVAVPTIGPFMGLIGAFCFSILGLIFP 414
            ..|  |:...::.....||:.:.::...:..:|:...:.:..|.|
pombe   323 DGYHAVITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILP 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 84/370 (23%)
SdaC 67..445 CDD:223884 84/366 (23%)
avt5NP_595211.1 SdaC 11..418 CDD:223884 84/370 (23%)
SLC5-6-like_sbd 17..409 CDD:294310 84/370 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.