DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and skat-1

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_498989.1 Gene:skat-1 / 176271 WormBaseID:WBGene00010307 Length:460 Species:Caenorhabditis elegans


Alignment Length:428 Identity:94/428 - (21%)
Similarity:185/428 - (43%) Gaps:31/428 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 TDNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYRTRRT 123
            |....:..|.|:....|...:|:|:...||.:....:...|.:..:.:::||:....|..::.|:
 Worm    38 TPTRAVLTLSKSMFNAGCFSLPYAWKLGGLWVSFVMSFVIAGLNWYGNHILVRASQHLAKKSDRS 102

  Fly   124 KMTFAEIAEAAFQKGP-KWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQLISYWTGTA 187
            .:.:...|:....... ::.|..:....:.:...:.....|.|||..:.::.|...|:....|..
 Worm   103 ALDYGHFAKKVCDYSDIRFLRNNSKAVMYFVNVTILFYQLGMCSVAILFISDNLVNLVGDHLGGT 167

  Fly   188 VSLRMLI--CIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDLPPVEERESVVW 250
            ...:|::  .:.|..::|......::.::..::|::||..:|..:...|.||.  |.:      |
 Worm   168 RHQQMILMATVSLFFILLTNMFTEMRIVSFFALVSSVFFVIGAAVIMQYTVQQ--PNQ------W 224

  Fly   251 STLP---------QFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLSQGMSGVTLIYMLLGF 306
            ..||         ....::::|.|...:::|:||.:..|.:||...||||..|...|.....|||
 Worm   225 DKLPAATNFTGTITMIGMSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTAFMTALGF 289

  Fly   307 LGYLRYGSATGESITLNLPIEEWPAQTVKVLISLAVYCTFGLQFFVCLEIIWDGIKEKCKKR-PT 370
            .||..:|.:...:||.|:| :|....||.|.:.|.......:..:|..::.::|.:.|...| |.
 Worm   290 FGYTGFGDSIAPTITTNVP-KEGLYSTVNVFLMLQSLLGNSIAMYVVYDMFFNGFRRKFGARFPN 353

  Fly   371 LVNYV----LRTVLVTAAVVLAVAVPTIGPFMGLIGAFCFSILGLIFPVVIELIVHWE--SGFGK 429
            :..::    .|...|....::||.:|.:...:.|:|....::..||||...|:|..|.  .|...
 Worm   354 VPKWLSDKGFRVFWVLVTYLMAVLIPKLEIMIPLVGVTSGALCALIFPPFFEMITFWTDWKGLLT 418

  Fly   430 YNWILWK---NAIITLCGIGALVFGTQAAIKDIVKAYS 464
            |...:.|   |.::...|:.|::.|....|..|::::|
 Worm   419 YRQRMTKIFINLVVMAIGVFAIIAGVYTNIHAIIQSFS 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 91/418 (22%)
SdaC 67..445 CDD:223884 87/399 (22%)
skat-1NP_498989.1 Aa_trans 35..446 CDD:279788 91/416 (22%)
SdaC 40..448 CDD:223884 90/416 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoDB 1 1.010 - - D284074at33208
OrthoFinder 1 1.000 - - FOG0000138
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X121
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.890

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