DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment path and Slc38a4

DIOPT Version :9

Sequence 1:NP_001261634.1 Gene:path / 39106 FlyBaseID:FBgn0036007 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_570104.1 Gene:Slc38a4 / 170573 RGDID:621836 Length:547 Species:Rattus norvegicus


Alignment Length:562 Identity:106/562 - (18%)
Similarity:190/562 - (33%) Gaps:197/562 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VDSGSKHAPQEMEQFLPGE--GKVMYKIQPRKSDTEQALAGNDFDPFALRDNPHPTTDNETLT-- 65
            :||...:...|.::||...  ||        |:.|:.|            |..||.|.:..::  
  Rat    38 MDSQFANEDAESQKFLTNGFLGK--------KTLTDYA------------DEHHPGTTSFGMSSF 82

  Fly    66 HLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKC---GHKLYYRTRRTKMTF 127
            :|..|.:|:||||:.:|...:|:::.:...:..|.:..:..::|:|.   |..|.|.        
  Rat    83 NLSNAIMGSGILGLSYAMANTGIVLFVIMLLTVAILSLYSVHLLLKTAKEGGSLIYE-------- 139

  Fly   128 AEIAEAAFQKGPKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQLIS----------- 181
             ::.|.||    .|      ..|......:.:...|..|.|..|:.....::|.           
  Rat   140 -KLGEKAF----GW------PGKIGAFISITMQNIGAMSSYLFIIKYELPEVIRVFMGLEENTGE 193

  Fly   182 -YWTGTAVSLRMLICIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQ---DLPPV 242
             |..|..:.|.:.:.|:| ||.|:..:..|.|.:..|:...||.   :.:..|...|   .||.:
  Rat   194 WYLNGNYLVLFVSVGIIL-PLSLLKNLGYLGYTSGFSLTCMVFF---VSVVIYKKFQIPCPLPVL 254

  Fly   243 EERESVVW--STLPQ-------------------------------------------------- 255
            :.....:.  :|||.                                                  
  Rat   255 DHNNGNLTFNNTLPMHVIMLPNNSESTGMNFMVDYTHRDPEGLDEKPAAGPLHGSGVEYEAHSGD 319

  Fly   256 --------FFSITIFAMEAIGV-------VMPLENNMKTPQSFLGICGVLSQGMSGVTLIYMLLG 305
                    |.|.|.:|:..:..       |:|:.:.:| .:|...:..|.:..::|:.::|:|..
  Rat   320 KCQPKYFVFNSRTAYAIPILAFAFVCHPEVLPIYSELK-DRSRRKMQTVSNISITGMLVMYLLAA 383

  Fly   306 FLGYLR-YGSATGE------------------------SITLNLPIEEWPAQTVKVLISLAVYCT 345
            ..|||. ||....|                        ::||.:||..:|.:|..:.:..     
  Rat   384 LFGYLSFYGEVEDELLHAYSKVYTFDTALLMVRLAVLVAVTLTVPIVLFPIRTSVITLLF----- 443

  Fly   346 FGLQFFVCLEIIWDGIKEKCKKRP--TLVNYVLRTVLVTAAVVLAVAVPTIGPFMGLIGAFCFSI 408
                                .:||  .:.::.:..:::....||.:.||||....|.|||...::
  Rat   444 --------------------PRRPFSWVKHFGIAAIIIALNNVLVILVPTIKYIFGFIGASSATM 488

  Fly   409 LGLIFPVVIELIVHWESGFGKYNWILWKNAIITLCGIGALVF 450
            |..|.|...            |..::.|..:.:...||||||
  Rat   489 LIFILPAAF------------YLKLVKKEPLRSPQKIGALVF 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pathNP_001261634.1 SLC5-6-like_sbd 56..456 CDD:294310 95/509 (19%)
SdaC 67..445 CDD:223884 86/489 (18%)
Slc38a4NP_570104.1 SLC5-6-like_sbd 73..535 CDD:382020 93/507 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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