DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and ECM5

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_013901.1 Gene:ECM5 / 855214 SGDID:S000004788 Length:1411 Species:Saccharomyces cerevisiae


Alignment Length:790 Identity:174/790 - (22%)
Similarity:274/790 - (34%) Gaps:240/790 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1619 VTKAQMDTNSKPLPESLNTNELVKTLLHAASNDAASTTTSLKSLPKASTSAAAGAAAAPGASSLV 1683
            |||.     |..|.|.:|...:|:...|.:|. .|.....::..|......:..:|..|.:    
Yeast     7 VTKI-----SHILNEPVNEKVMVQNGFHESSK-IADIELEIQERPSIKQWESPRSAVIPTS---- 61

  Fly  1684 RVNSNSSLFSGSA-KSRTAA----QTSSTAAAVAKKYKDDTPIKMANNTA-----FPRHDDPTQM 1738
              |.|.|.|..:. |||.||    :|..:...|  :..:..|.::.:...     ...|..||  
Yeast    62 --NHNFSPFLYTQFKSRGAAPFAPETIKSVDLV--ELPEGVPARVFHEKTGLFYQISPHSIPT-- 120

  Fly  1739 VEAPIFRPTEKEFADPIEFIERITPIAARFGIC---KIIPPASFKPECRISDEMRFTAYNQYVHK 1800
                 |...:||..|||:|.|.:..:.:.:| |   ||||.|.           :||..|..|.:
Yeast   121 -----FILAKKELPDPIKFYELVEDLGSVYG-CVKLKIIPDAD-----------KFTQLNVDVDR 168

  Fly  1801 MLHRWGPSAKELSAIKKYLATQSI----------------VMNHPPWIGGMEVDLPRLYHTVQEL 1849
            :   |..:.|:.....::..|:.:                .:...|.|....:||.||...|:..
Yeast   169 L---WFKARKQFFNSNEFQRTKIVDFYAKLYNFHNKIKKSTLTRIPSIDKRTLDLYRLRSCVKLR 230

  Fly  1850 GGLKEVIEKKKWARVAEEMCIP-KLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAK 1913
            ||...|.|||.||::..|:... ::.....|.|...|.|.||.:|         :::|       
Yeast   231 GGFNAVCEKKLWAQIGRELGYSGRIMSSLSTSLRSAYAKILLDFD---------IYEE------- 279

  Fly  1914 REARARRNADRFVNTESVSNE----EDDLSSDEDEESEEEI--------------DGVSMECIVK 1960
             |.:|.||.::  |.:.|.:|    .:..|.||:|...::.              :...|..|..
Yeast   280 -EEQAARNNEK--NEDMVESEIFRHSNSRSRDEEEPLHKKAKIHRDVFRAGSINHEFKRMRDIKH 341

  Fly  1961 GRSMP-----LSQF----------------YRIARNTMALWFKS-----TDPTVNEVEAEFWRHV 1999
            .:..|     |::|                :....|.|.::.||     |.|..| :...:.:.:
Yeast   342 IKGFPTYFNSLTEFKLGYTQSTETTLPGYDFTFWENGMEIYDKSKYETKTSPVYN-LRQYYEKSL 405

  Fly  2000 AVRDSHVCVHSGS--------------------------------IDSSGWGYGFP----SPGPK 2028
            ||..:.|.....|                                ||:   |.|.|    |||..
Yeast   406 AVFTAIVAKFGSSYPDLFAKHTTLPQKEFERLYFHLLSEHFIDFEIDT---GLGLPCSMRSPGNN 467

  Fly  2029 GKGSNYA----RHPWNLKVLTNNSGSVLRSLG-PVMGVTVPTLHVGMLFSACCWYRDPHGLSWIE 2088
            .....:|    ...|||..:..|..|:|:.|. .:...|..|..:|||||...|....|.|..|:
Yeast   468 SSNEKFAIKNILDQWNLDNIPLNELSLLQHLDLDMANFTRTTYDIGMLFSCQGWSVSDHFLPSID 532

  Fly  2089 YLHTGASKLWYGIPDDQSANFRA-----------------------ALTSLIPTHC--------- 2121
            :.|.|::||.|.|.......|.|                       .|.|.|.|..         
Yeast   533 FNHLGSTKLVYSIAPKDMEKFEALIARGKSEWDTIQSRPRYSTSDDELKSFIETDFYKSFLDAEQ 597

  Fly  2122 --------QNKTIWLPCDTV-------------MVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAY 2165
                    .|.....|.|.:             :..|:.:...|:.|.:..|:.|.:|..||:|:
Yeast   598 SADYSNTGDNSKNSFPEDKIAGNTLHDGSQSDFIFEPNFILANGIKLYKTTQEQGSYIFKFPKAF 662

  Fly  2166 TSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQML 2230
            |.|:.:|:.:|::..||..|||..          |.|.|.:: .::.|..|.|  ||...::.:|
Yeast   663 TCSIGSGFYLSQNAKFAPSSWLRF----------SSEAAKWT-SKMGFLPGLD--VNQLLINALL 714

  Fly  2231 PMLNDVCEKE 2240
            ...|.|..|:
Yeast   715 NSNNPVLRKK 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 15/43 (35%)
ARID 1812..1893 CDD:279697 23/97 (24%)
JmjC 2066..2181 CDD:202224 37/167 (22%)
zf-C5HC2 2281..2334 CDD:280996
ECM5NP_013901.1 BRIGHT 187..280 CDD:128777 24/109 (22%)
cupin_RmlC-like 512..662 CDD:424065 32/149 (21%)
PHD_Ecm5p_Lid2p_like 1240..1287 CDD:276993
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341400
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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