DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Jarid2 and ATP2

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_012655.3 Gene:ATP2 / 853585 SGDID:S000003882 Length:511 Species:Saccharomyces cerevisiae


Alignment Length:558 Identity:96/558 - (17%)
Similarity:181/558 - (32%) Gaps:174/558 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1513 RAAAAAAATAVQLTLSPTENCKIEGKPSKAPTGR-----GA----KKQQQQAPA---------PP 1559
            |||..||..:..|..:..:.|......|...||:     ||    ..:|.:.||         |.
Yeast    12 RAAFKAAKQSAPLLSTSWKRCMASAAQSTPITGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQ 76

  Fly  1560 APPVEASGDSDAEGATFYIPLQGAGVGGSGDGGIQG---------VAVKLGREGPDGPNQKVVMQ 1615
            ...|........|.....|.:.|.      :|.::|         ::|.:|||            
Yeast    77 GKLVLEVAQHLGENTVRTIAMDGT------EGLVRGEKVLDTGGPISVPVGRE------------ 123

  Fly  1616 ATLVTKAQMDTNSKPLPESLNTNELVKTLLHA-------ASNDAASTTTSLKSLPKASTSAAAGA 1673
             ||  ...::...:|:.|.......::..:||       .|..|....|.:|.:...:..|..|.
Yeast   124 -TL--GRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGK 185

  Fly  1674 AAAPGA-------------SSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMAN 1725
            ....|.             :::.:.:...|:|:|      ..:.:.....:.::.|:...|.:..
Yeast   186 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTG------VGERTREGNDLYREMKETGVINLEG 244

  Fly  1726 NT----AFPRHDDP---------TQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPA 1777
            .:    .|.:.::|         |.:..|..||  ::|..|.:.||:.|                
Yeast   245 ESKVALVFGQMNEPPGARARVALTGLTIAEYFR--DEEGQDVLLFIDNI---------------- 291

  Fly  1778 SFKPECRISDEMRFTAYNQYVHKMLHR------WGPS-AKELSAIKKYLATQ---SIVMNHPPWI 1832
                       .|||.....|..:|.|      :.|: |.::..:::.:.|.   |:......::
Yeast   292 -----------FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTTKKGSVTSVQAVYV 345

  Fly  1833 GGMEVDLPR-------------LYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDI 1884
            ...::..|.             |...:.|||....|......:|:.:...:.:...|..:|:.:.
Yeast   346 PADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQET 410

  Fly  1885 YCKY--------LLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVN-----TESVSNEED 1936
            ...|        :|..|.||  |:.||..|          |||: ..||::     .|..:....
Yeast   411 LQTYKSLQDIIAILGMDELS--EQDKLTVE----------RARK-IQRFLSQPFAVAEVFTGIPG 462

  Fly  1937 DLSSDEDEESEEEIDGVSMECIVKGR--SMPLSQFYRI 1972
            .|...:|..:       |.:.:::|:  ::|...||.:
Yeast   463 KLVRLKDTVA-------SFKAVLEGKYDNIPEHAFYMV 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 8/40 (20%)
ARID 1812..1893 CDD:279697 13/104 (13%)
JmjC 2066..2181 CDD:202224
zf-C5HC2 2281..2334 CDD:280996
ATP2NP_012655.3 PRK09280 41..500 CDD:236447 88/529 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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