DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and AT1G63490

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_001320899.1 Gene:AT1G63490 / 842655 AraportID:AT1G63490 Length:1462 Species:Arabidopsis thaliana


Alignment Length:672 Identity:176/672 - (26%)
Similarity:303/672 - (45%) Gaps:96/672 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1742 PIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRIS-DEMRFTAYNQYVHKMLHRW 1805
            |::.|||.||.||:|:|.:|.|.|..:|||||:||.::||...:. :.::|....|.:|::..| 
plant    32 PVYYPTEDEFKDPLEYIHKIKPEAEVYGICKIVPPNNWKPPFGLDLESVKFPTKTQEIHRLQFR- 95

  Fly  1806 GPSAKELSAIKKYLATQSIVMNHPPWIG----------GMEVDLPRLYHTVQELGGLKEVIEKKK 1860
             ||:......|  |.....:..|   :|          |.|:||.:|::.|:..||.::|::.||
plant    96 -PSSCNSKTFK--LEYNRFLEEH---LGKKLKKRVVFEGEELDLCKLFNAVKRFGGYEKVVKGKK 154

  Fly  1861 WARVAEEMCIPKLAQDRVTK-----LDDIYCKYLLPYDT--------LSPAERQKLFDEVEADWA 1912
            |..|.:.|.    :.::::|     |..:|.::|..::.        .|.:.::|:........:
plant   155 WGEVYQFMS----SGEKISKCAKHVLCQLYKEHLHDFENYHNRMNVDASKSCKRKINGIRRCSES 215

  Fly  1913 KREARARRNADRFVNTESVSNEE------DDLSSDEDEESEEEIDGVS----------------- 1954
            :...|.:||||  |....|.|||      :...||:..|.....|..:                 
plant   216 RSSKRRKRNAD--VKNPKVENEEGVDQACEQCKSDKHGEVMLLCDSCNKGWHIYCLSPPLKHIPL 278

  Fly  1955 -----MECI---------VKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSH 2005
                 :||:         |.|:.:.|..|.|||......||.|...:..::|.:||..|......
plant   279 GNWYCLECLNTDEETFGFVPGKCLLLEDFKRIADRAKRKWFGSGTVSRTQIEKKFWEIVEGSGGE 343

  Fly  2006 VCVHSGS-IDSSGWGYGFPSPGPKGKGS-------NYARHPWNLKVLTNNSGSVLRSL-GPVMGV 2061
            |.|..|: :|:|.:|.|||..|.:...|       .|...||||..:....||:|::: ..:.||
plant   344 VEVMYGNDLDTSVYGSGFPRIGDQRPESVEADIWDEYCGSPWNLNNMPKLKGSMLQAIRHNINGV 408

  Fly  2062 TVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTI 2126
            |||.|::|||||:.||:.:.|....:.|||.|.:|.|||||...::.|...:...:|.....:..
plant   409 TVPWLYLGMLFSSFCWHFEDHCFYSVNYLHWGEAKCWYGIPGSAASAFEKVMRKTLPDLFDAQPD 473

  Fly  2127 WLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAK 2191
            .|.....|:.|.:|.:..|.:..:.|:||.|::.||:::.:....|...:|:|.|||..||....
plant   474 LLFQLVTMLSPTVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGG 538

  Fly  2192 DDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLPMLNDVCEKESAAREQLRAAGV-TST 2255
            ..........:|::.|.|:||..:......|:|....:...|..:..||...||||..:|: .|:
plant   539 SGAELYRLYRKPSVISHEELLCVVAKGNCCNNEGSIHLKKELLRIYSKEKTWREQLWKSGILRSS 603

  Fly  2256 EKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMV--RTEDGNIYCLQHALKNLNNGNIQAK 2318
            .....|.......::.|       .|.:|:..|::|.:  ........||:| .|:|  ...:..
plant   604 PMFVPECADSVGIEEDP-------TCIICQQFLHLSAIVCNCRPSVFACLEH-WKHL--CECEPT 658

  Fly  2319 QCKLIYAYNVDDIQQLIRQLQE 2340
            :.:|.|.|.:.::..:::::::
plant   659 KLRLEYRYTLAELDMMVQEVEK 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 20/38 (53%)
ARID 1812..1893 CDD:279697 22/95 (23%)
JmjC 2066..2181 CDD:202224 35/114 (31%)
zf-C5HC2 2281..2334 CDD:280996 12/54 (22%)
AT1G63490NP_001320899.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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