DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and AT1G63490

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_001320899.1 Gene:AT1G63490 / 842655 AraportID:AT1G63490 Length:1462 Species:Arabidopsis thaliana


Alignment Length:672 Identity:176/672 - (26%)
Similarity:303/672 - (45%) Gaps:96/672 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1742 PIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRIS-DEMRFTAYNQYVHKMLHRW 1805
            |::.|||.||.||:|:|.:|.|.|..:|||||:||.::||...:. :.::|....|.:|::..| 
plant    32 PVYYPTEDEFKDPLEYIHKIKPEAEVYGICKIVPPNNWKPPFGLDLESVKFPTKTQEIHRLQFR- 95

  Fly  1806 GPSAKELSAIKKYLATQSIVMNHPPWIG----------GMEVDLPRLYHTVQELGGLKEVIEKKK 1860
             ||:......|  |.....:..|   :|          |.|:||.:|::.|:..||.::|::.||
plant    96 -PSSCNSKTFK--LEYNRFLEEH---LGKKLKKRVVFEGEELDLCKLFNAVKRFGGYEKVVKGKK 154

  Fly  1861 WARVAEEMCIPKLAQDRVTK-----LDDIYCKYLLPYDT--------LSPAERQKLFDEVEADWA 1912
            |..|.:.|.    :.::::|     |..:|.::|..::.        .|.:.::|:........:
plant   155 WGEVYQFMS----SGEKISKCAKHVLCQLYKEHLHDFENYHNRMNVDASKSCKRKINGIRRCSES 215

  Fly  1913 KREARARRNADRFVNTESVSNEE------DDLSSDEDEESEEEIDGVS----------------- 1954
            :...|.:||||  |....|.|||      :...||:..|.....|..:                 
plant   216 RSSKRRKRNAD--VKNPKVENEEGVDQACEQCKSDKHGEVMLLCDSCNKGWHIYCLSPPLKHIPL 278

  Fly  1955 -----MECI---------VKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSH 2005
                 :||:         |.|:.:.|..|.|||......||.|...:..::|.:||..|......
plant   279 GNWYCLECLNTDEETFGFVPGKCLLLEDFKRIADRAKRKWFGSGTVSRTQIEKKFWEIVEGSGGE 343

  Fly  2006 VCVHSGS-IDSSGWGYGFPSPGPKGKGS-------NYARHPWNLKVLTNNSGSVLRSL-GPVMGV 2061
            |.|..|: :|:|.:|.|||..|.:...|       .|...||||..:....||:|::: ..:.||
plant   344 VEVMYGNDLDTSVYGSGFPRIGDQRPESVEADIWDEYCGSPWNLNNMPKLKGSMLQAIRHNINGV 408

  Fly  2062 TVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTI 2126
            |||.|::|||||:.||:.:.|....:.|||.|.:|.|||||...::.|...:...:|.....:..
plant   409 TVPWLYLGMLFSSFCWHFEDHCFYSVNYLHWGEAKCWYGIPGSAASAFEKVMRKTLPDLFDAQPD 473

  Fly  2127 WLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAK 2191
            .|.....|:.|.:|.:..|.:..:.|:||.|::.||:::.:....|...:|:|.|||..||....
plant   474 LLFQLVTMLSPTVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGG 538

  Fly  2192 DDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLPMLNDVCEKESAAREQLRAAGV-TST 2255
            ..........:|::.|.|:||..:......|:|....:...|..:..||...||||..:|: .|:
plant   539 SGAELYRLYRKPSVISHEELLCVVAKGNCCNNEGSIHLKKELLRIYSKEKTWREQLWKSGILRSS 603

  Fly  2256 EKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMV--RTEDGNIYCLQHALKNLNNGNIQAK 2318
            .....|.......::.|       .|.:|:..|::|.:  ........||:| .|:|  ...:..
plant   604 PMFVPECADSVGIEEDP-------TCIICQQFLHLSAIVCNCRPSVFACLEH-WKHL--CECEPT 658

  Fly  2319 QCKLIYAYNVDDIQQLIRQLQE 2340
            :.:|.|.|.:.::..:::::::
plant   659 KLRLEYRYTLAELDMMVQEVEK 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818 20/38 (53%)
ARID_JARD2 1804..1915 CDD:350634 27/133 (20%)
cupin_RmlC-like 2066..2181 CDD:477354 35/114 (31%)
zf-C5HC2 2281..2334 CDD:460750 12/54 (22%)
AT1G63490NP_001320899.1 JmjN 32..71 CDD:128818 20/38 (53%)
BRIGHT 99..193 CDD:128777 22/102 (22%)
PHD_RSF1 241..286 CDD:277018 4/44 (9%)
JmjC 412..528 CDD:396791 35/115 (30%)
zf-C5HC2 622..672 CDD:460750 12/52 (23%)
46 <755..>1048 CDD:222878
PLU-1 922..1179 CDD:462475
PHD_SF 1355..1398 CDD:473978
Blue background indicates that the domain is not in the aligned region.

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