DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and JMJ18

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_174367.6 Gene:JMJ18 / 839963 AraportID:AT1G30810 Length:819 Species:Arabidopsis thaliana


Alignment Length:675 Identity:161/675 - (23%)
Similarity:268/675 - (39%) Gaps:170/675 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1714 KYKD-DTPIKMANNTAFPRH---------DDPTQMV--EAPIFRPTEKEFADPIEFIERITPIAA 1766
            |.|| ||.::..::   |||         |:..:.:  :||:|.|:.:||.||:.:||:|.|:|.
plant    23 KDKDKDTIMEQPSS---PRHRKVVARWLPDEAQRPIINDAPVFTPSLEEFVDPLAYIEKIRPLAE 84

  Fly  1767 RFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPW 1831
            .:|||:||||:::||.||:.::                   |..|.:.....:.|..::.|..|.
plant    85 PYGICRIIPPSTWKPPCRLKEK-------------------SIWEQTKFPTRIQTVDLLQNREPM 130

  Fly  1832 IGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLS 1896
                                      |||                                    
plant   131 --------------------------KKK------------------------------------ 133

  Fly  1897 PAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKG 1961
            |..|::          ||...:|..:.:   ..|.|:..:..||.|.||.    .|.:     .|
plant   134 PKSRKR----------KRRRNSRMGSSK---RRSGSSPAESTSSPEAEEK----FGFN-----SG 176

  Fly  1962 RSMPLSQFYRIARNTMALWFKSTD---------PTVNEVEAEFWRHVAVRDSHVCVHSGS-IDSS 2016
            ....|.:|.:.|.:....:|:..|         |:|:::|.|:||.|......|.|:.|: :::.
plant   177 SDFTLDEFEKYALHFKDSYFEKKDSGGDIVKWTPSVDDIEGEYWRIVEQPTDEVEVYYGADLENG 241

  Fly  2017 GWGYGFPSPGPKGKGSN---YARHPWNLKVLTNNSGSVLRSLG-PVMGVTVPTLHVGMLFSACCW 2077
            ..|.||.....|..||:   |....|||..|....||||.... .:.||.||.|:|||.||:.||
plant   242 VLGSGFYKRAEKFTGSDMEQYTLSGWNLNNLPRLPGSVLSFEDCDISGVLVPWLYVGMCFSSFCW 306

  Fly  2078 YRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTD 2142
            :.:.|.|..:.|.|.|..|:|||:|...:.....|:...:|...:.:...|........|.:|.|
plant   307 HVEDHHLYSLNYHHFGEPKVWYGVPGSNATALEKAMRKHLPDLFEEQPDLLHGLVTQFSPSILKD 371

  Fly  2143 RGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFS 2207
            .||...|:.|..||:::.|||||.:....|:..:|:|..|.:.||...::......:.......|
plant   372 EGVQAYRVVQNSGEYVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLAHGQNAVELYSKETRKTSLS 436

  Fly  2208 LEQLLFALGYDQ------------RVNSEALHQMLPMLNDVCEKESAAREQLRAAGVTSTEKVQA 2260
            .::||....|:.            :.|:..|.     ....|.|.......::|       ::|.
plant   437 HDKLLLGAAYEAVKALWELSASEGKENTTNLR-----WKSFCGKNGTLTNAIQA-------RLQM 489

  Fly  2261 EKGQ---------KAKKQQQPPYKSIESECDLCRANLYISM--VRTEDGNIYCLQHALKNLNNGN 2314
            |:|:         ..||.::....:.|.||..|..:|::|.  .:.......||:|| .:|.:.:
plant   490 EEGRITALGRDSSSLKKMEKDFDSNCERECFSCFYDLHLSASGCKCSPEEYACLKHA-DDLCSCD 553

  Fly  2315 IQAKQCKLIYAYNVDDIQQLIRQLQ 2339
            :  |...::..|.:|::..|:|.|:
plant   554 V--KDGFILLRYTMDELSSLVRALE 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818 20/40 (50%)
ARID_JARD2 1804..1915 CDD:350634 11/110 (10%)
cupin_RmlC-like 2066..2181 CDD:477354 38/114 (33%)
zf-C5HC2 2281..2334 CDD:460750 12/54 (22%)
JMJ18NP_174367.6 JmjN 59..99 CDD:128818 20/39 (51%)
JmjC 294..410 CDD:396791 38/115 (33%)
zf-C5HC2 519..571 CDD:460750 12/54 (22%)
FYRN 658..702 CDD:128814
FYRC 708..794 CDD:197781
Blue background indicates that the domain is not in the aligned region.

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