DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and REF6

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_680116.2 Gene:REF6 / 824002 AraportID:AT3G48430 Length:1360 Species:Arabidopsis thaliana


Alignment Length:666 Identity:153/666 - (22%)
Similarity:234/666 - (35%) Gaps:222/666 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1741 APIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRW 1805
            ||.||||..||.|||.:|.:|...|:|:|||||:||  ..|                        
plant    20 APEFRPTLAEFQDPIAYILKIEEEASRYGICKILPP--LPP------------------------ 58

  Fly  1806 GPSAK-ELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMC 1869
             ||.| .:|.:.:.||.::.........|..:.|           ||                  
plant    59 -PSKKTSISNLNRSLAARAAARVRDGGFGACDYD-----------GG------------------ 93

  Fly  1870 IPKLAQDRVTKLDDI-YCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSN 1933
             |..|    |:...| :|          |.:::.:...|   |.                     
plant    94 -PTFA----TRQQQIGFC----------PRKQRPVQRPV---WQ--------------------- 119

  Fly  1934 EEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRH 1998
                 |.:|....|.|....:.|                 :|.:....|.:..:..|:|..:|| 
plant   120 -----SGEEYSFGEFEFKAKNFE-----------------KNYLKKCGKKSQLSALEIETLYWR- 161

  Fly  1999 VAVRDSHVCVHSGSIDSSGWGYGFPSPGPK---------------GKGSNYARHPWNLKVLTNNS 2048
             |..|....|.          |....||..               |:|.......||::.::...
plant   162 -ATVDKPFSVE----------YANDMPGSAFIPLSLAAARRRESGGEGGTVGETAWNMRAMSRAE 215

  Fly  2049 GSVLRSL-GPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAA 2112
            ||:|:.: ..:.|||.|.::|.|:||...|:.:.|.|..:.|||.||.|.|||:|.|.:..|.  
plant   216 GSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPKDAALAFE-- 278

  Fly  2113 LTSLIPTHCQNKTI-------WLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLA 2170
              .::..|...:.:       .|...|.::.|.:....|:..||:.|.||||:|.||.||.|..:
plant   279 --EVVRVHGYGEELNPLVTFSTLGEKTTVMSPEVFVKAGIPCCRLVQNPGEFVVTFPGAYHSGFS 341

  Fly  2171 TGYVVSESVYFATMSWLDLAKDDFRDIHESC--EPAMFSLEQLL--FALGYDQRVNSEALHQMLP 2231
            .|:...|:...||..||.:|||  ..|..:.  .|.|.|..|||  |.|....||         |
plant   342 HGFNFGEASNIATPEWLRMAKD--AAIRRAAINYPPMVSHLQLLYDFVLALGSRV---------P 395

  Fly  2232 MLNDVCEKESAAREQLRAAGVTSTEKVQAE-------------KGQKAKKQQQPPYKSIESECDL 2283
            ...:...:.|..:::.|:.|...|:|:..:             ||.......|.     .|:..:
plant   396 TSINPKPRSSRLKDKARSEGERLTKKLFVQNIIHNNELLSSLGKGSPVALLPQS-----SSDISV 455

  Fly  2284 CRANLYISMVRTEDGNIYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKI------ 2342
            | ::|.|.            .|.:.|..| .||.| |:.:.:.:|  :..|...|::.:      
plant   456 C-SDLRIG------------SHLITNQEN-PIQLK-CEDLSSDSV--VVDLSNGLKDTVSVKEKF 503

  Fly  2343 --------NHKAAVKK 2350
                    ||.|:.:|
plant   504 TSLCERSRNHLASTEK 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 22/39 (56%)
ARID 1812..1893 CDD:279697 12/81 (15%)
JmjC 2066..2181 CDD:202224 39/121 (32%)
zf-C5HC2 2281..2334 CDD:280996 11/52 (21%)
REF6NP_680116.2 JmjN 21..52 CDD:280526 17/30 (57%)
JmjC 233..352 CDD:202224 39/122 (32%)
C2H2 Zn finger 1245..1266 CDD:275368
C2H2 Zn finger 1268..1290 CDD:275368
C2H2 Zn finger 1298..1320 CDD:275368
C2H2 Zn finger 1328..1348 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4277
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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