DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and MEE27

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_181034.1 Gene:MEE27 / 818053 AraportID:AT2G34880 Length:806 Species:Arabidopsis thaliana


Alignment Length:651 Identity:151/651 - (23%)
Similarity:255/651 - (39%) Gaps:147/651 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1730 PRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDE-----M 1789
            |.::....:.|||:|.||.:||.|.:.:||:|.|:|..||||:|:||:::.|.||:..:     .
plant    50 PANEKRPDIGEAPVFHPTSEEFEDTLAYIEKIRPLAESFGICRIVPPSNWSPPCRLKGDSIWKNK 114

  Fly  1790 RFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKE 1854
            .|....|:|..:.:| ||..|:                           .|:         |.|.
plant   115 NFPTRVQFVDLLQNR-GPVKKK---------------------------TPK---------GRKR 142

  Fly  1855 VIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARAR 1919
              ::.|::|                              |::|.:|                   
plant   143 --KRGKYSR------------------------------TVAPKKR------------------- 156

  Fly  1920 RNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKST 1984
                    ..|||.     |....:.:|||..|..     .|....|.:|.:.|::....:|:..
plant   157 --------NGSVSK-----SVSTPKATEEENFGFE-----SGPEFTLEKFEKYAQDFKDSYFERK 203

  Fly  1985 ----DPTVNEVEAEFWRHVAVRDSHVCVHSGS-----IDSSGWGYGFPSPGPKGKGSNYARHPWN 2040
                ||:|.|:|.|:||.:....:.|.|..|:     |..||:..|...|..:.....|....||
plant   204 DNVGDPSVEEIEGEYWRIIEKETNEVKVLYGTDLENPILGSGFSKGVKIPTRRNDMDKYISSGWN 268

  Fly  2041 LKVLTNNSGSVLRSLG-PVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDD 2104
            |..|....||:|.... .:.||.||.|:|||.||..||:.:.:.|..:.|.|.|..|:|||:|..
plant   269 LNNLARLQGSLLSFEDCEISGVQVPWLYVGMCFSTFCWHVEDNHLYSLNYHHFGEPKVWYGVPGS 333

  Fly  2105 QSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSL 2169
            .:.....|:...:|.....:...|........|.:|.:.||.:.|..|..||:::.|||||.|..
plant   334 HATGLEKAMRKHLPDLFDEQPDLLHELVTQFSPTILKNEGVPVYRAVQNAGEYVLTFPRAYHSGF 398

  Fly  2170 ATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLPMLN 2234
            ..|:..:|:|..|.:.||...::......:.......|.:::|....: :.|.|.:.|.     .
plant   399 NCGFNCAEAVNVAPVDWLAHGQNAVEIYSQETRKTSLSHDKILLGAAF-EAVKSLSAHG-----E 457

  Fly  2235 D---------VCEKESAAREQLRAAGVTSTEKVQA-EKGQKAKKQQQPPYKSIESECDLCRANLY 2289
            |         .|.|:....:.:.|......::::| ..|....|..:....:.|.||..|.::|:
plant   458 DNTKRFSWKRFCGKDGIITKAIEARLRMEEKRIEALGNGFSLVKMDKDFDSNCERECISCFSDLH 522

  Fly  2290 ISMVRTEDGNIY----CLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQ-EKINHKAAVK 2349
            :|....::.:..    |.:|.:     .:.:.|...:...|.:|::..|:|.|: |..:.||.:.
plant   523 LSATGCKNCSSLEEYGCTKHDI-----CSCEGKDRFIFLRYTIDELSSLVRALEGESDDLKAWLS 582

  Fly  2350 K 2350
            |
plant   583 K 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 21/40 (53%)
ARID 1812..1893 CDD:279697 5/80 (6%)
JmjC 2066..2181 CDD:202224 37/114 (32%)
zf-C5HC2 2281..2334 CDD:280996 9/56 (16%)
MEE27NP_181034.1 JmjN 60..101 CDD:128818 21/40 (53%)
JmjC 294..410 CDD:202224 37/115 (32%)
zf-C5HC2 514..566 CDD:280996 9/56 (16%)
FYRN 643..687 CDD:128814
FYRC 693..781 CDD:197781
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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