DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and Kdm5b

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_690855.2 Gene:Kdm5b / 75605 MGIID:1922855 Length:1544 Species:Mus musculus


Alignment Length:772 Identity:198/772 - (25%)
Similarity:306/772 - (39%) Gaps:189/772 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1740 EAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKP--ECRISDEMRFTAYNQYVHKML 1802
            |.|:|.|:.:|||||..||.:|.|||.:.||||:.||..::|  .|.: |::.||...|.::::.
Mouse    31 ECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDV-DKLHFTPRIQRLNELE 94

  Fly  1803 HRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEE 1867
            .:.......|..|.||...|...:. .|.:....:||.:|...|.|.||...|.:.:||.::|.:
Mouse    95 AQTRVKLNFLDQIAKYWELQGSTLK-IPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATK 158

  Fly  1868 M---------------------------------CI--PKL---AQDRVTKLDDI-YCKYLLPYD 1893
            |                                 |:  |.|   .:|:..|..|| ..:.:.|.:
Mouse   159 MGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTSDTKDKEYKPHDIPQRQSVQPAE 223

  Fly  1894 TLSPAERQKLFD----------------------------------------------------E 1906
            |..||.|.|...                                                    |
Mouse   224 TCPPARRAKRMRAEAMNIKIEPEEATEARTHNLRRRMGCTTPKWENEKEMKSTIKQEPTEKKDCE 288

  Fly  1907 VEADWAKREARARRNA---DRFVNTESVSNEEDD--LSSDEDEESEEEI------------DGVS 1954
            :|::..|.::||::.|   |.:|.....|..::|  |..|..::|....            |...
Mouse   289 LESEKEKPKSRAKKTATAVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLVPPLHDVPKGDWRC 353

  Fly  1955 MECIVKGRSMPLSQ--FYRIARN-------TMALWFKS--------TDPTVNEVEAEFWRHVAVR 2002
            .:|:.:..:.|...  |.:.||:       .||..|||        ..|| ..||.||||.|:..
Mouse   354 PKCLAQECNKPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPT-ELVEKEFWRLVSTI 417

  Fly  2003 DSHVCVHSGS-IDSSGWGYGFPSPGPKGKGS----NYARHPWNLKVLTNNSGSVLRSL-GPVMGV 2061
            :..|.|..|: |.|..:|.|||....|.|.|    .|....|||..:.....|||..: ..:.|:
Mouse   418 EEDVTVEYGADIASKEFGSGFPVRDGKIKISPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGM 482

  Fly  2062 TVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTI 2126
            .:|.|:|||.||:.||:.:.|....|.|||.|..|.|||:|...:......:..|.|....::..
Mouse   483 KLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPD 547

  Fly  2127 WLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAK 2191
            .|.....::.|:.|....|.:.|..|..|||::.|||||.|....|:..:|:|.|.|:.||.|.:
Mouse   548 LLHQLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGR 612

  Fly  2192 ---DDFRDIHESCEPAMFSLEQLLFALG-----YDQRVNSEALHQMLPMLNDVCEKESAAREQLR 2248
               :.:|.:|..|   :||.::::..:.     .|..|.|.....|..|:.|    |.|.||.:|
Mouse   613 QCVEHYRLLHRYC---VFSHDEMICKMASKADVLDVVVASTVQKDMAIMIED----EKALRETVR 670

  Fly  2249 AAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMV--RTEDGNIYCLQHALKNLN 2311
            ..||..:|::..|.           ....|.:|..|:...::|.:  ..:.|.:.||.| :|.|.
Mouse   671 KLGVIDSERMDFEL-----------LPDDERQCIKCKTTCFMSAISCSCKPGLLVCLHH-VKELC 723

  Fly  2312 NGNIQAKQC-----KLIYAYNVDDIQQLIRQLQ---EKINH---------KAAVKKK 2351
            :       |     .|.|.|.:||:..::..|:   |..|.         :|.:.||
Mouse   724 S-------CPPYKYNLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKK 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818 21/40 (53%)
ARID_JARD2 1804..1915 CDD:350634 34/201 (17%)
cupin_RmlC-like 2066..2181 CDD:477354 39/114 (34%)
zf-C5HC2 2281..2334 CDD:460750 15/59 (25%)
Kdm5bNP_690855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
JmjN 31..72 CDD:128818 21/40 (53%)
ARID_KDM5B 94..183 CDD:350638 18/89 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 200..228 6/27 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 269..297 3/27 (11%)
PHD1_KDM5B 311..356 CDD:277076 7/44 (16%)
JmjC 486..602 CDD:396791 39/115 (34%)
zf-C5HC2 692..744 CDD:460750 15/59 (25%)
PLU-1 757..1088 CDD:462475 3/17 (18%)
PHD_SF 1178..1221 CDD:473978
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1297..1318
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1374..1447
PHD3_KDM5B 1486..1535 CDD:277157
Blue background indicates that the domain is not in the aligned region.

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