DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and kdm6al

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_005168853.1 Gene:kdm6al / 569207 ZFINID:ZDB-GENE-070112-2002 Length:1356 Species:Danio rerio


Alignment Length:1411 Identity:259/1411 - (18%)
Similarity:455/1411 - (32%) Gaps:477/1411 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1154 EESGKIFGIASVSLAQSSGPDNTKCTLGKC-----------------------------GSIHKP 1189
            |.|.|.|.:|.:        |:::|||.|.                             ..:..|
Zfish   184 ESSLKHFQLALI--------DSSRCTLSKAEIQFHIAHLYEIQKRHRAAKEAYESLLQTEDLQTP 240

  Fly  1190 VLGPVVPTEGYFG---DQLSSKERRKAKVNMTHEQIQKWLIECSSNPDEIQDDLDDDFDDSLRPQ 1251
            |....:...|:..   :||..|..:           ..:.|:|      :|..|:.|        
Zfish   241 VRAAALQQLGWMHHTVEQLGDKANK-----------DSYAIQC------LQKSLEAD-------- 280

  Fly  1252 QSTTPPPTRDDKELSASFSSSSK------NTRGDLGKSESA---WSAKGPSLKATPVLVTPPNRK 1307
                |...:....|...:||..|      :.|..:.|||::   |.:.|       ||.      
Zfish   281 ----PNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIG-------VLY------ 328

  Fly  1308 ELHEQADSKDCDALD----------------------YDKSSTP-------VNLTQKITSNESLA 1343
                |..::..|||.                      |:..:.|       :|.|:..|.:.:.|
Zfish   329 ----QQQNQPMDALQAYICAVQLDHSHAAAWMDLGTLYESCNQPHDAIKCYINATRSKTCSNTAA 389

  Fly  1344 VEKKVNDRKG---KESAKAAASKAATQPRSTAATPPTPISSTPTPASLTPSKSSPTPPPAVKQKA 1405
            :..::...:.   |....:...|:.|.|....|.      |.|.||.||..:...:..|    :|
Zfish   390 LAARIKYLQAQFCKLRLNSLQGKSKTLPNIEEAW------SLPIPAELTSRQGVQSTGP----QA 444

  Fly  1406 EKGKRNATAGGGATALASPP--AAPTPANPKRTPVYNQKNAKAQQQQAETKPASNPPSGAGTKRE 1468
            .|.:..|::|..|:|.|.||  .|..||.                  |:|.||..       :|.
Zfish   445 CKAQPGASSGSQASAPALPPHSTALEPAG------------------AQTSPARR-------RRS 484

  Fly  1469 SVYAFGKDDESGSKSGNRRRTDPSPVPAPALVPNAL-------SERSPTKKRAAAAAAATAVQLT 1526
            |..|....|...|.|.:      :|||...|.|..|       :.|:..|............||:
Zfish   485 SSPAQSSTDSWSSGSAH------TPVPHWYLTPQKLQLLEQLRASRASLKPAQLQMLEQMEAQLS 543

  Fly  1527 L------SPTENCKIEGKPS-----KAPTGRG-AKKQQQQAPAP-PAPPVEA----SGDSDAEGA 1574
            .      ...:|...:.:||     ..|..|| |.:.....|.| |.|...|    ..:|.|.|.
Zfish   544 AMHLHQQQMRQNSSGQIRPSLSNGPSLPASRGPALQTLHNGPGPRPGPQTPAVRNNHTESRANGD 608

  Fly  1575 TFYI----------------------PLQGAGVG-GS---GDGGIQGVAVKLGREGPDGPNQKVV 1613
            ..|:                      |.||...| ||   |..||:..:.....:|  ||:.:||
Zfish   609 VPYLHPNTLPHNCTSPGAGRRSPQLPPAQGLQKGPGSHWAGPNGIRSDSSSGSADG--GPHNQVV 671

  Fly  1614 MQATLVTKAQMDTNSKP-------LPE-----------------SLNTNELVKTLLHAAS----- 1649
            ..|:....|....:..|       ||.                 :|..|....|..|:.:     
Zfish   672 DSASAGDAAGSSGSPPPRRCSPCALPHTATSGAPHSTIPTKESAALQANGSTATDTHSPASPHRP 736

  Fly  1650 -NDAASTTTSLKSLPKASTSAAAGAAA--APGASSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAV 1711
             :..::|||....||...|..|...||  .|..|:|....|:|:  |..|.:.:||..|      
Zfish   737 PSPVSATTTDNPPLPNLQTLPATAPAAPLTPVGSTLPAPGSSSA--SSPASALSAASPS------ 793

  Fly  1712 AKKYKDDTPIKMANNTAFPRHDDPT---QMVEAPI-FRPTEKEFADP--IEFIERITPIAARFGI 1770
                              ||..|||   :.::||: .....::...|  :|..:.||..||....
Zfish   794 ------------------PRPGDPTTPLRPLQAPVTVNGCSEDSRSPLKLEPEQSITSSAAHRSA 840

  Fly  1771 CKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNH------- 1828
            ...|.|.|       :|.::       ..:.|.|.|            |::.|:::|.       
Zfish   841 SISIYPTS-------TDALK-------ACRSLGRNG------------LSSCSLLLNRCPPPRLP 879

  Fly  1829 PPWIGGMEVD-----LPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQ------DRVT--- 1879
            ||....::.|     .|.:|            :|.|:      :...|.|.|      :.||   
Zfish   880 PPPAPPLDKDKLNPPTPSIY------------LENKR------DAFFPPLHQFCTNPSNPVTVIR 926

  Fly  1880 ------KLD----------DIYCKYLLPYDT-LS-PAERQKLFDEVEADWAKREARARRNADRFV 1926
                  |||          |:..::|:...| || ||:...........|.....|:.....::.
Zfish   927 GLAGALKLDLGLFSTKTLVDMNPEHLVEVRTQLSQPADENWDASGTRKQWRCESTRSHTTIAKYA 991

  Fly  1927 NTESVSNEEDDLSSDEDEESEEEIDG---VSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTV 1988
            ..::.|.:| .|..:.:::.::|:..   .|.|.:.:.|..|..|                    
Zfish   992 QYQAASFQE-SLREENEKKGQKELSDSEIASSESVCRRRKGPFKQ-------------------- 1035

  Fly  1989 NEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNSGSVLR 2053
                .:|..::.|.           |...|         |.:....::.|...:|:  ::|::|.
Zfish  1036 ----VKFGMNIDVS-----------DEKKW---------KLQLQELSKLPAFARVV--SAGNLLS 1074

  Fly  2054 SLG-PVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKL-WYGIPDDQSANFRAALTSL 2116
            .:| .::|:....|.:.:..|....:::.:....:. ::.|.... |:.:|:        ....:
Zfish  1075 HVGHRILGMNTVQLCMKVPGSRTPGHQEHNNFCAVN-INIGPGDCEWFAVPE--------PYWGV 1130

  Fly  2117 IPTHCQNKTI-------WLPCDTVMVPPHM--LTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATG 2172
            :...|:...|       |         |::  |.:..|.:.|..|:||:.:.:.........|.|
Zfish  1131 MSEFCERNNINFLKGSWW---------PNLEDLYEARVPVYRFIQRPGDLVWLNTGTVHWGQAIG 1186

  Fly  2173 YV--VSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLP--ML 2233
            :.  :|.:|...|.....||.:.:.........:|..:..|.:.:..:.:|..:.|.:|:.  :|
Zfish  1187 WCNNISWNVGPLTAHQYKLAVERYEWNKLQSVKSMVPMVHLSWNMARNIKVADQRLFEMIKFCLL 1251

  Fly  2234 NDVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMVRTEDG 2298
            ..:.:.:| .||.|.:||        .|...:.:.:.:|.:     .|.:|...::..:....:|
Zfish  1252 RTLRQTQS-IRESLLSAG--------KETLWQRRSRDEPAH-----YCSVCEVEVWNLLFVCSEG 1302

  Fly  2299 N-------IYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQ 2337
            :       :.|...|.|    .::..:...::..:.::|:.||..|
Zfish  1303 SPCRPAAAVQCQDCARK----ASVDLQGFVVLQQFRMEDLTQLYEQ 1344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 11/43 (26%)
ARID 1812..1893 CDD:279697 20/117 (17%)
JmjC 2066..2181 CDD:202224 19/126 (15%)
zf-C5HC2 2281..2334 CDD:280996 7/59 (12%)
kdm6alXP_005168853.1 TPR_11 92..161 CDD:290150
TPR repeat 93..121 CDD:276809
TPR_11 129..194 CDD:290150 4/9 (44%)
TPR repeat 129..159 CDD:276809
TPR_1 130..163 CDD:278916
TPR repeat 164..194 CDD:276809 4/9 (44%)
TPR repeat 205..233 CDD:276809 0/27 (0%)
TPR repeat 243..278 CDD:276809 7/51 (14%)
TPR_17 272..303 CDD:290167 9/48 (19%)
TPR_11 285..348 CDD:290150 16/79 (20%)
TPR repeat 285..312 CDD:276809 5/26 (19%)
TPR repeat 317..347 CDD:276809 8/46 (17%)
TPR_1 318..351 CDD:278916 8/49 (16%)
TPR repeat 352..378 CDD:276809 2/25 (8%)
JmjC 1053..1117 CDD:214721 9/66 (14%)
JmjC 1087..1195 CDD:202224 18/125 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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