DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and atp5f1b

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_001019600.2 Gene:atp5f1b / 554135 ZFINID:ZDB-GENE-030131-124 Length:517 Species:Danio rerio


Alignment Length:573 Identity:102/573 - (17%)
Similarity:175/573 - (30%) Gaps:204/573 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1483 SGNRRRTDPSPVPAPAL--VPNALSERSPTKKRAAAAAAATAVQLTLSPTENCKI-EGKPSKAPT 1544
            :|..:...|...|..||  .|:..|.|......||||||:..:...:....:.:. ||       
Zfish    10 TGALQALKPGVHPLKALNGAPSLFSRRDYAAPAAAAAAASGRIVAVIGAVVDVQFDEG------- 67

  Fly  1545 GRGAKKQQQQAPAPPAPPVEASGDSDAEGATFYIPLQGAGVGGSGDGGIQGVAVKLGRE-----G 1604
                           .||:                |....|.|.....:..||..||..     .
Zfish    68 ---------------LPPI----------------LNALEVAGRDSRLVLEVAQHLGENTVRTIA 101

  Fly  1605 PDGPNQKVVMQATLVTKAQ-------------MDTNSKPLPE--SLNTNELVKTLLHAASNDAAS 1654
            .||....|..|..|.|.|.             |:...:|:.|  .::|.:...  :||.:.:...
Zfish   102 MDGTEGLVRGQKVLDTGAPIRIPVGPETLGRIMNVIGEPIDERGPISTKQTAP--IHAEAPEFTD 164

  Fly  1655 TT-------TSLKSLPKASTSAAAGAAAAPGASSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVA 1712
            .:       |.:|.:...:..|..|.....|.:.:.:......|.:..||:...   .|..|.|.
Zfish   165 MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG---YSVFAGVG 226

  Fly  1713 KKYKD-----------------DTPIKMANNTAFPRHDDP---------TQMVEAPIFRPTEKEF 1751
            ::.::                 ||..|:|  ..:.:.::|         |.:..|..||  ::|.
Zfish   227 ERTREGNDLYHEMIESGVINLKDTTSKVA--LVYGQMNEPPGARARVALTGLTVAEYFR--DQEG 287

  Fly  1752 ADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIK 1816
            .|.:.||:.|                           .|||.....|..:|.|. |||       
Zfish   288 QDVLLFIDNI---------------------------FRFTQAGSEVSALLGRI-PSA------- 317

  Fly  1817 KYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKL 1881
                     :.:.|.:             ..::|.::|.|...|              :..:|.:
Zfish   318 ---------VGYQPTL-------------ATDMGTMQERITTTK--------------KGSITSV 346

  Fly  1882 DDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARAR----------RNADRFVNTESVSNEED 1936
            ..||    :|.|.|:.......|..::|......|.|.          .:..|.::...|..|..
Zfish   347 QAIY----VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGTEHY 407

  Fly  1937 DLSSD-----EDEESEEEI------DGVSME---CIVKGRSMP--LSQFYRIA 1973
            |::..     :|.:|.::|      |.:|.|   .:.:.|.:.  |||.:::|
Zfish   408 DVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVA 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818 8/40 (20%)
ARID_JARD2 1804..1915 CDD:350634 17/110 (15%)
cupin_RmlC-like 2066..2181 CDD:477354
zf-C5HC2 2281..2334 CDD:460750
atp5f1bNP_001019600.2 AtpD 50..515 CDD:439825 88/533 (17%)
Blue background indicates that the domain is not in the aligned region.

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